Compareads: comparing huge metagenomic experiments

by Maillet, Nicolas, Lemaitre, Claire, Chikhi, Rayan, Lavenier, Dominique, Peterlongo, Pierre
Published 2012

MindTheGap: integrated detection and assembly of short and long insertions

by Rizk, Guillaume, Gouin, Anaïs, Chikhi, Rayan, Lemaitre, Claire
Published 2014

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

by Lemaitre, Claire, Zaghloul, Lamia, Sagot, Marie-France, Gautier, Christian, Arneodo, Alain, Tannier, Eric, Audit, Benjamin
Published 2009

A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

by Lemaitre, Claire, Barré, Aurélien, Citti, Christine, Tardy, Florence, Thiaucourt, François, Sirand-Pugnet, Pascal, Thébault, Patricia
Published 2011

Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

by Véron, Amélie S, Lemaitre, Claire, Gautier, Christian, Lacroix, Vincent, Sagot, Marie-France
Published 2011

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

by Benoit, Gaëtan, Lemaitre, Claire, Lavenier, Dominique, Drezen, Erwan, Dayris, Thibault, Uricaru, Raluca, Rizk, Guillaume
Published 2015

GATB: Genome Assembly & Analysis Tool Box

by Drezen, Erwan, Rizk, Guillaume, Chikhi, Rayan, Deltel, Charles, Lemaitre, Claire, Peterlongo, Pierre, Lavenier, Dominique
Published 2014

Reference-free detection of isolated SNPs

by Uricaru, Raluca, Rizk, Guillaume, Lacroix, Vincent, Quillery, Elsa, Plantard, Olivier, Chikhi, Rayan, Lemaitre, Claire, Peterlongo, Pierre
Published 2015

Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

by Dumas, Pascaline, Legeai, Fabrice, Lemaitre, Claire, Scaon, Erwan, Orsucci, Marion, Labadie, Karine, Gimenez, Sylvie, Clamens, Anne-Laure, Henri, Hélène, Vavre, Fabrice, Aury, Jean-Marc, Fournier, Philippe, Kergoat, Gael J., d’Alençon, Emmanuelle
Published 2015

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

by Le Bras, Yvan, Collin, Olivier, Monjeaud, Cyril, Lacroix, Vincent, Rivals, Éric, Lemaitre, Claire, Miele, Vincent, Sacomoto, Gustavo, Marchet, Camille, Cazaux, Bastien, Zine El Aabidine, Amal, Salmela, Leena, Alves-Carvalho, Susete, Andrieux, Alexan, Uricaru, Raluca, Peterlongo, Pierre
Published 2016

Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae

by Dordet-Frisoni, Emilie, Baranowski, Eric, Barré, Aurélien, Blanchard, Alain, Breton, Marc, Couture, Carole, Dupuy, Virginie, Gaurivaud, Patrice, Jacob, Daniel, Lemaitre, Claire, Manso-Silván, Lucía, Nikolski, Macha, Nouvel, Laurent-Xavier, Poumarat, François, Sirand-Pugnet, Pascal, Thébault, Patricia, Theil, Sébastien, Thiaucourt, François, Citti, Christine, Tardy, Florence
Published 2013

Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle

by Manso-Silván, Lucía, Tardy, Florence, Baranowski, Eric, Barré, Aurélien, Blanchard, Alain, Breton, Marc, Couture, Carole, Citti, Christine, Dordet-Frisoni, Emilie, Dupuy, Virginie, Gaurivaud, Patrice, Jacob, Daniel, Lemaitre, Claire, Nikolski, Macha, Nouvel, Laurent-Xavier, Poumarat, François, Thébault, Patricia, Theil, Sébastien, Thiaucourt, François, Sirand-Pugnet, Pascal
Published 2013

Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats

by Dupuy, Virginie, Sirand-Pugnet, Pascal, Baranowski, Eric, Barré, Aurélien, Breton, Marc, Couture, Carole, Dordet-Frisoni, Emilie, Gaurivaud, Patrice, Jacob, Daniel, Lemaitre, Claire, Manso-Silván, Lucía, Nikolski, Macha, Nouvel, Laurent-Xavier, Poumarat, François, Tardy, Florence, Thébault, Patricia, Theil, Sébastien, Citti, Christine, Blanchard, Alain, Thiaucourt, François
Published 2013