Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)

Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)

The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is a scientific database of gene, protein and genomic information for the yeast Saccharomyces cerevisiae. SGD has recently developed two new resources that facilitate nucleotide and protein sequence comparisons between S.cerevisiae...

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Main Authors: Balakrishnan, Rama, Christie, Karen R., Costanzo, Maria C., Dolinski, Kara, Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hong, Eurie L., Nash, Robert, Oughtred, Rose, Skrzypek, Marek, Theesfeld, Chandra L., Binkley, Gail, Dong, Qing, Lane, Christopher, Sethuraman, Anand, Weng, Shuai, Botstein, David, Cherry, J. Michael
Format: Online
Language:English
Published: Oxford University Press 2005
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539977/
id pubmed-539977
recordtype oai_dc
spelling pubmed-5399772005-01-04 Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD) Balakrishnan, Rama Christie, Karen R. Costanzo, Maria C. Dolinski, Kara Dwight, Selina S. Engel, Stacia R. Fisk, Dianna G. Hirschman, Jodi E. Hong, Eurie L. Nash, Robert Oughtred, Rose Skrzypek, Marek Theesfeld, Chandra L. Binkley, Gail Dong, Qing Lane, Christopher Sethuraman, Anand Weng, Shuai Botstein, David Cherry, J. Michael Articles The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is a scientific database of gene, protein and genomic information for the yeast Saccharomyces cerevisiae. SGD has recently developed two new resources that facilitate nucleotide and protein sequence comparisons between S.cerevisiae and other organisms. The Fungal BLAST tool provides directed searches against all fungal nucleotide and protein sequences available from GenBank, divided into categories according to organism, status of completeness and annotation, and source. The Model Organism BLASTP Best Hits resource displays, for each S.cerevisiae protein, the single most similar protein from several model organisms and presents links to the database pages of those proteins, facilitating access to curated information about potential orthologs of yeast proteins. Oxford University Press 2005-01-01 2004-12-17 /pmc/articles/PMC539977/ /pubmed/15608219 http://dx.doi.org/10.1093/nar/gki023 Text en Copyright © 2005 Oxford University Press
repository_type Open Access Journal
institution_category Foreign Institution
institution US National Center for Biotechnology Information
building NCBI PubMed
collection Online Access
language English
format Online
author Balakrishnan, Rama
Christie, Karen R.
Costanzo, Maria C.
Dolinski, Kara
Dwight, Selina S.
Engel, Stacia R.
Fisk, Dianna G.
Hirschman, Jodi E.
Hong, Eurie L.
Nash, Robert
Oughtred, Rose
Skrzypek, Marek
Theesfeld, Chandra L.
Binkley, Gail
Dong, Qing
Lane, Christopher
Sethuraman, Anand
Weng, Shuai
Botstein, David
Cherry, J. Michael
spellingShingle Balakrishnan, Rama
Christie, Karen R.
Costanzo, Maria C.
Dolinski, Kara
Dwight, Selina S.
Engel, Stacia R.
Fisk, Dianna G.
Hirschman, Jodi E.
Hong, Eurie L.
Nash, Robert
Oughtred, Rose
Skrzypek, Marek
Theesfeld, Chandra L.
Binkley, Gail
Dong, Qing
Lane, Christopher
Sethuraman, Anand
Weng, Shuai
Botstein, David
Cherry, J. Michael
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
author_facet Balakrishnan, Rama
Christie, Karen R.
Costanzo, Maria C.
Dolinski, Kara
Dwight, Selina S.
Engel, Stacia R.
Fisk, Dianna G.
Hirschman, Jodi E.
Hong, Eurie L.
Nash, Robert
Oughtred, Rose
Skrzypek, Marek
Theesfeld, Chandra L.
Binkley, Gail
Dong, Qing
Lane, Christopher
Sethuraman, Anand
Weng, Shuai
Botstein, David
Cherry, J. Michael
author_sort Balakrishnan, Rama
title Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
title_short Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
title_full Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
title_fullStr Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
title_full_unstemmed Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
title_sort fungal blast and model organism blastp best hits: new comparison resources at the saccharomyces genome database (sgd)
description The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is a scientific database of gene, protein and genomic information for the yeast Saccharomyces cerevisiae. SGD has recently developed two new resources that facilitate nucleotide and protein sequence comparisons between S.cerevisiae and other organisms. The Fungal BLAST tool provides directed searches against all fungal nucleotide and protein sequences available from GenBank, divided into categories according to organism, status of completeness and annotation, and source. The Model Organism BLASTP Best Hits resource displays, for each S.cerevisiae protein, the single most similar protein from several model organisms and presents links to the database pages of those proteins, facilitating access to curated information about potential orthologs of yeast proteins.
publisher Oxford University Press
publishDate 2005
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539977/
_version_ 1611370237574250496

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