OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

Summary: A recent article identified an artifact in multiple single-cell RNA-seq (scRNA-seq) datasets generated by the Fluidigm C1 platform. Specifically, Leng et al. showed significantly increased gene expression in cells captured from sites with small or large plate output IDs. We refer to this ar...

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Bibliographic Details
Main Authors: Leng, Ning, Choi, Jeea, Chu, Li-Fang, Thomson, James A., Kendziorski, Christina, Stewart, Ron
Format: Online
Language:English
Published: Oxford University Press 2016
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4848403/