OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

by Leng, Ning, Choi, Jeea, Chu, Li-Fang, Thomson, James A., Kendziorski, Christina, Stewart, Ron
Published 2016

A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

by Korthauer, Keegan D., Chu, Li-Fang, Newton, Michael A., Li, Yuan, Thomson, James, Stewart, Ron, Kendziorski, Christina
Published 2016

An Expandable, Inducible Hemangioblast State Regulated by Fibroblast Growth Factor

by Vereide, David T., Vickerman, Vernella, Swanson, Scott A., Chu, Li-Fang, McIntosh, Brian E., Thomson, James A.
Published 2014

Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm

by Chu, Li-Fang, Leng, Ning, Zhang, Jue, Hou, Zhonggang, Mamott, Daniel, Vereide, David T., Choi, Jeea, Kendziorski, Christina, Stewart, Ron, Thomson, James A.
Published 2016

Oscope identifies oscillatory genes in unsynchronized single cell RNA-seq experiments

by Leng, Ning, Chu, Li-Fang, Barry, Chris, Li, Yuan, Choi, Jeea, Li, Xiaomao, Jiang, Peng, Stewart, Ron M., Thomson, James A., Kendziorski, Christina
Published 2015

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema

by Stewart, Ron, Rascón, Cynthia Alexander, Tian, Shulan, Nie, Jeff, Barry, Chris, Chu, Li-Fang, Ardalani, Hamisha, Wagner, Ryan J., Probasco, Mitchell D., Bolin, Jennifer M., Leng, Ning, Sengupta, Srikumar, Volkmer, Michael, Habermann, Bianca, Tanaka, Elly M., Thomson, James A., Dewey, Colin N.
Published 2013

Mouse Tmem135 mutation reveals a mechanism involving mitochondrial dynamics that leads to age-dependent retinal pathologies

by Lee, Wei-Hua, Higuchi, Hitoshi, Ikeda, Sakae, Macke, Erica L, Takimoto, Tetsuya, Pattnaik, Bikash R, Liu, Che, Chu, Li-Fang, Siepka, Sandra M, Krentz, Kathleen J, Rubinstein, C Dustin, Kalejta, Robert F, Thomson, James A, Mullins, Robert F, Takahashi, Joseph S, Pinto, Lawrence H, Ikeda, Akihiro
Published 2016