Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis
•We performed whole genome sequencing (WGS) of Mycobacterium bovis for a single molecular (VNTR) type.•Under-sampling of one lineage was caused by switching between VNTR-types.•Pairwise SNP distances showed a weak genetic isolation by distance pattern.•Bayesian phylogeographic inference was feasible...
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Bibliographic Details
| Main Authors: |
Trewby, Hannah,
Wright, David,
Breadon, Eleanor L.,
Lycett, Samantha J.,
Mallon, Tom R.,
McCormick, Carl,
Johnson, Paul,
Orton, Richard J.,
Allen, Adrian R.,
Galbraith, Julie,
Herzyk, Pawel,
Skuce, Robin A.,
Biek, Roman,
Kao, Rowland R. |
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| Format: | Online
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| Language: | English |
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| Published: |
Elsevier
2016
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| Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773590/
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