Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments
Elastic network models (ENMs) are valuable and efficient tools for characterizing the collective internal dynamics of proteins based on the knowledge of their native structures. The increasing evidence that the biological functionality of RNAs is often linked to their innate internal motions poses t...
Main Authors: | Pinamonti, Giovanni, Bottaro, Sandro, Micheletti, Cristian, Bussi, Giovanni |
---|---|
Format: | Online |
Language: | English |
Published: |
Oxford University Press
2015
|
Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551938/ |
Similar Items
-
The role of nucleobase interactions in RNA structure and dynamics
by: Bottaro, Sandro, et al.
Published: (2014) -
RNA folding pathways in stop motion
by: Bottaro, Sandro, et al.
Published: (2016) -
Empirical Corrections to the Amber RNA Force Field
with Target Metadynamics
by: Gil-Ley, Alejandro, et al.
Published: (2016) -
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations
by: Di Palma, Francesco, et al.
Published: (2015) -
ATP dependent NS3 helicase interaction with RNA: insights from molecular simulations
by: Pérez-Villa, Andrea, et al.
Published: (2016)