A new reference implementation of the PSICQUIC web service

The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. C...

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Main Authors:	del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Format:	Online
Language:	English
Published:	Oxford University Press 2013
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977660/

id	pubmed-3977660
recordtype	oai_dc
spelling	pubmed-39776602014-04-07 A new reference implementation of the PSICQUIC web service del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning Web Services The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. Currently providing >150 million binary interaction evidences from 28 servers globally, the PSICQUIC interface allows the concurrent search of multiple molecular-interaction information resources using a single query. Here, we present an extension of the PSICQUIC specification (version 1.3), which has been released to be compliant with the enhanced standards in molecular interactions. The new release also includes a new reference implementation of the PSICQUIC server available to the data providers. It offers augmented web service capabilities and improves the user experience. PSICQUIC has been running for almost 5 years, with a user base growing from only 4 data providers to 28 (April 2013) allowing access to 151 310 109 binary interactions. The power of this web service is shown in PSICQUIC View web application, an example of how to simultaneously query, browse and download results from the different PSICQUIC servers. This application is free and open to all users with no login requirement (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml). Oxford University Press 2013-07 2013-05-11 /pmc/articles/PMC3977660/ /pubmed/23671334 http://dx.doi.org/10.1093/nar/gkt392 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning
spellingShingle	del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning A new reference implementation of the PSICQUIC web service
author_facet	del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning
author_sort	del-Toro, Noemi
title	A new reference implementation of the PSICQUIC web service
title_short	A new reference implementation of the PSICQUIC web service
title_full	A new reference implementation of the PSICQUIC web service
title_fullStr	A new reference implementation of the PSICQUIC web service
title_full_unstemmed	A new reference implementation of the PSICQUIC web service
title_sort	new reference implementation of the psicquic web service
description	The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. Currently providing >150 million binary interaction evidences from 28 servers globally, the PSICQUIC interface allows the concurrent search of multiple molecular-interaction information resources using a single query. Here, we present an extension of the PSICQUIC specification (version 1.3), which has been released to be compliant with the enhanced standards in molecular interactions. The new release also includes a new reference implementation of the PSICQUIC server available to the data providers. It offers augmented web service capabilities and improves the user experience. PSICQUIC has been running for almost 5 years, with a user base growing from only 4 data providers to 28 (April 2013) allowing access to 151 310 109 binary interactions. The power of this web service is shown in PSICQUIC View web application, an example of how to simultaneously query, browse and download results from the different PSICQUIC servers. This application is free and open to all users with no login requirement (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml).
publisher	Oxford University Press
publishDate	2013
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977660/
_version_	1612074857179119616

A new reference implementation of the PSICQUIC web service

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