RNA-Seq optimization with eQTL gold standards

RNA-Seq optimization with eQTL gold standards

Bibliographic Details
Main Authors:	Ellis, Shannon E, Gupta, Simone, Ashar, Foram N, Bader, Joel S, West, Andrew B, Arking, Dan E
Format:	Online
Language:	English
Published:	BioMed Central 2013
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890578/

Similar Items

Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism
by: Gupta, Simone, et al.
Published: (2014)

Reveal—visual eQTL analytics
by: Jäger, Günter, et al.
Published: (2012)

Meta-eQTL: a tool set for flexible eQTL meta-analysis
by: Di Narzo, Antonio Fabio, et al.
Published: (2014)

Genome-wide QTL and eQTL analyses using Mendel
by: Zhou, Hua, et al.
Published: (2016)

eQTL Epistasis – Challenges and Computational Approaches
by: Huang, Yang, et al.
Published: (2013)

Cross-tissue eQTL enrichment of associations in schizophrenia.
by: Francesco Bettella, et al.

Robust Linear Models for Cis-eQTL Analysis
by: Rantalainen, Mattias, et al.
Published: (2015)

Deciphering gamma-decalactone biosynthesis in strawberry fruit using a combination of genetic mapping, RNA-Seq and eQTL analyses
by: Sánchez-Sevilla, José F, et al.
Published: (2014)

Overlap of expression Quantitative Trait Loci (eQTL) in human brain and blood
by: McKenzie, Marna, et al.
Published: (2014)

eQTL discovery and their association with severe equine asthma in European Warmblood horses
by: Victor C. Mason, et al.
Published: (2018-08-01)

Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans
by: Basten L. Snoek, et al.
Published: (2017-06-01)

A Robust Statistical Method for Association-Based eQTL Analysis
by: Jiang, Ning, et al.
Published: (2011)

Comparison of Strategies to Detect Epistasis from eQTL Data
by: Kapur, Karen, et al.
Published: (2011)

Genome-wide expression quantitative trait loci (eQTL) analysis in maize
by: Holloway, Beth, et al.
Published: (2011)

An eQTL biological data visualization challenge and approaches from the visualization community
by: Bartlett, Christopher W, et al.
Published: (2012)

seeQTL: a searchable database for human eQTLs
by: Xia, Kai, et al.
Published: (2012)

Teamwork: Improved eQTL Mapping Using Combinations of Machine Learning Methods
by: Ackermann, Marit, et al.
Published: (2012)

A Statistical Framework for Joint eQTL Analysis in Multiple Tissues
by: Flutre, Timothée, et al.
Published: (2013)

Learning Gene Networks under SNP Perturbations Using eQTL Datasets
by: Zhang, Lingxue, et al.
Published: (2014)

Graph-regularized dual Lasso for robust eQTL mapping
by: Cheng, Wei, et al.
Published: (2014)

kruX: matrix-based non-parametric eQTL discovery
by: Qi, Jianlong, et al.
Published: (2014)

Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia
by: Lei Cai, et al.
Published: (2018-09-01)

Sparse regression models for unraveling group and individual associations in eQTL mapping
by: Cheng, Wei, et al.
Published: (2016)

Prior knowledge guided eQTL mapping for identifying candidate genes
by: Wang, Yunli, et al.
Published: (2016)

Network-Based Analysis of eQTL Data to Prioritize Driver Mutations
by: De Maeyer, Dries, et al.
Published: (2016)

Expression Quantitative Trait Loci (eQTL) Mapping in Puerto Rican Children
by: Chen, Wei, et al.
Published: (2015)

Cell Specific eQTL Analysis without Sorting Cells
by: Westra, Harm-Jan, et al.
Published: (2015)

Allele-specific expression and eQTL analysis in mouse adipose tissue
by: Hasin-Brumshtein, Yehudit, et al.
Published: (2014)

Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits
by: Ponsuksili, Siriluck, et al.
Published: (2010)

Statistical properties of interval mapping methods on quantitative trait loci location: impact on QTL/eQTL analyses
by: Wang, Xiaoqiang, et al.
Published: (2012)

Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data–Application to Monocyte Gene Regulation
by: Choudhury, Mudra, et al.
Published: (2016)

Mapping Novel Pathways in Cardiovascular Disease Using eQTL Data: The Past, Present, and Future of Gene Expression Analysis
by: Gupta, Rajat M., et al.
Published: (2013)

Joint eQTL assessment of whole blood and dura mater tissue from individuals with Chiari type I malformation
by: Lock, Eric F, et al.
Published: (2015)

Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies
by: Panousis, Nikolaos I, et al.
Published: (2014)

Identification and analysis of a SMAD3 cis-acting eQTL operating in primary osteoarthritis and in the aneurysms and osteoarthritis syndrome
by: Raine, E.V.A., et al.
Published: (2014)

Insight into Genotype-Phenotype Associations through eQTL Mapping in Multiple Cell Types in Health and Immune-Mediated Disease
by: Peters, James E., et al.
Published: (2016)

MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues
by: Lewin, Alex, et al.
Published: (2016)

Cis-eQTL-based trans-ethnic meta-analysis reveals novel genes associated with breast cancer risk.
by: Joshua D Hoffman, et al.
Published: (2017-03-01)

Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs
by: Zhang, Xiaoling, et al.
Published: (2014)

Cis-eQTL analysis and functional validation of candidate susceptibility genes for high-grade serous ovarian cancer
by: Lawrenson, Kate, et al.
Published: (2015)