PairMotif: A New Pattern-Driven Algorithm for Planted (l, d) DNA Motif Search

Motif search is a fundamental problem in bioinformatics with an important application in locating transcription factor binding sites (TFBSs) in DNA sequences. The exact algorithms can report all (l, d) motifs and find the best one under a specific objective function. However, it is still a challengi...

Full description

Bibliographic Details
Main Authors: Yu, Qiang, Huo, Hongwei, Zhang, Yipu, Guo, Hongzhi
Format: Online
Language:English
Published: Public Library of Science 2012
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3485246/