PRIDE: Quality control in a proteomics data repository
The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner....
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| Format: | Online |
| Language: | English |
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Oxford University Press
2012
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| Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308160/ |
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pubmed-33081602012-03-20 PRIDE: Quality control in a proteomics data repository Csordas, Attila Ovelleiro, David Wang, Rui Foster, Joseph M. Ríos, Daniel Vizcaíno, Juan Antonio Hermjakob, Henning Original Articles The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions. Oxford University Press 2012-02-13 /pmc/articles/PMC3308160/ /pubmed/22434838 http://dx.doi.org/10.1093/database/bas004 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| repository_type |
Open Access Journal |
| institution_category |
Foreign Institution |
| institution |
US National Center for Biotechnology Information |
| building |
NCBI PubMed |
| collection |
Online Access |
| language |
English |
| format |
Online |
| author |
Csordas, Attila Ovelleiro, David Wang, Rui Foster, Joseph M. Ríos, Daniel Vizcaíno, Juan Antonio Hermjakob, Henning |
| spellingShingle |
Csordas, Attila Ovelleiro, David Wang, Rui Foster, Joseph M. Ríos, Daniel Vizcaíno, Juan Antonio Hermjakob, Henning PRIDE: Quality control in a proteomics data repository |
| author_facet |
Csordas, Attila Ovelleiro, David Wang, Rui Foster, Joseph M. Ríos, Daniel Vizcaíno, Juan Antonio Hermjakob, Henning |
| author_sort |
Csordas, Attila |
| title |
PRIDE: Quality control in a proteomics data repository |
| title_short |
PRIDE: Quality control in a proteomics data repository |
| title_full |
PRIDE: Quality control in a proteomics data repository |
| title_fullStr |
PRIDE: Quality control in a proteomics data repository |
| title_full_unstemmed |
PRIDE: Quality control in a proteomics data repository |
| title_sort |
pride: quality control in a proteomics data repository |
| description |
The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions. |
| publisher |
Oxford University Press |
| publishDate |
2012 |
| url |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308160/ |
| _version_ |
1611515556022714368 |