PRIDE: Quality control in a proteomics data repository

by Csordas, Attila, Ovelleiro, David, Wang, Rui, Foster, Joseph M., Ríos, Daniel, Vizcaíno, Juan Antonio, Hermjakob, Henning
Published 2012

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

by Lewis, Steven, Csordas, Attila, Killcoyne, Sarah, Hermjakob, Henning, Hoopmann, Michael R, Moritz, Robert L, Deutsch, Eric W, Boyle, John
Published 2012

From Peptidome to PRIDE: Public proteomics data migration at a large scale

by Csordas, Attila, Wang, Rui, Ríos, Daniel, Reisinger, Florian, Foster, Joseph M, Slotta, Douglas J, Vizcaíno, Juan Antonio, Hermjakob, Henning
Published 2013

Exploring the potential of public proteomics data

by Vaudel, Marc, Verheggen, Kenneth, Csordas, Attila, Ræder, Helge, Berven, Frode S., Martens, Lennart, Vizcaíno, Juan A., Barsnes, Harald
Published 2015

PRIDE Inspector: a tool to visualize and validate MS proteomics data

by Wang, Rui, Fabregat, Antonio, Ríos, Daniel, Ovelleiro, David, Foster, Joseph M., Côté, Richard G., Griss, Johannes, Csordas, Attila, Perez-Riverol, Yasset, Reisinger, Florian, Hermjakob, Henning, Martens, Lennart, Vizcaíno, Juan Antonio
Published 2012

2016 update of the PRIDE database and its related tools

by Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A., Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Published 2016

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets*

by Perez-Riverol, Yasset, Xu, Qing-Wei, Wang, Rui, Uszkoreit, Julian, Griss, Johannes, Sanchez, Aniel, Reisinger, Florian, Csordas, Attila, Ternent, Tobias, del-Toro, Noemi, Dianes, Jose A., Eisenacher, Martin, Hermjakob, Henning, Vizcaíno, Juan Antonio
Published 2016

2016 update of the PRIDE database and its related tools

by Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A., Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Published 2016

The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium*

by Côté, Richard G., Griss, Johannes, Dianes, José A., Wang, Rui, Wright, James C., van den Toorn, Henk W.P., van Breukelen, Bas, Heck, Albert J. R., Hulstaert, Niels, Martens, Lennart, Reisinger, Florian, Csordas, Attila, Ovelleiro, David, Perez-Rivevol, Yasset, Barsnes, Harald, Hermjakob, Henning, Vizcaíno, Juan Antonio
Published 2012

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

by Vizcaíno, Juan Antonio, Côté, Richard G., Csordas, Attila, Dianes, José A., Fabregat, Antonio, Foster, Joseph M., Griss, Johannes, Alpi, Emanuele, Birim, Melih, Contell, Javier, O’Kelly, Gavin, Schoenegger, Andreas, Ovelleiro, David, Pérez-Riverol, Yasset, Reisinger, Florian, Ríos, Daniel, Wang, Rui, Hermjakob, Henning
Published 2013

ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination

by Vizcaíno, Juan A., Deutsch, Eric W., Wang, Rui, Csordas, Attila, Reisinger, Florian, Ríos, Daniel, Dianes, José A., Sun, Zhi, Farrah, Terry, Bandeira, Nuno, Binz, Pierre-Alain, Xenarios, Ioannis, Eisenacher, Martin, Mayer, Gerhard, Gatto, Laurent, Campos, Alex, Chalkley, Robert J., Kraus, Hans-Joachim, Albar, Juan Pablo, Martinez-Bartolomé, Salvador, Apweiler, Rolf, Omenn, Gilbert S., Martens, Lennart, Jones, Andrew R., Hermjakob, Henning
Published 2014