Meta-IDBA: a de Novo assembler for metagenomic data
Motivation: Next-generation sequencing techniques allow us to generate reads from a microbial environment in order to analyze the microbial community. However, assembling of a set of mixed reads from different species to form contigs is a bottleneck of metagenomic research. Although there are many a...
Main Authors: | Peng, Yu, Leung, Henry C. M., Yiu, S. M., Chin, Francis Y. L. |
---|---|
Format: | Online |
Language: | English |
Published: |
Oxford University Press
2011
|
Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3117360/ |
Similar Items
-
IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels
by: Peng, Yu, et al.
Published: (2013) -
MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning
by: Wang, Yi, et al.
Published: (2014) -
Ray Meta: scalable de novo metagenome assembly and profiling
by: Boisvert, Sébastien, et al.
Published: (2012) -
MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample
by: Wang, Yi, et al.
Published: (2012) -
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM and Look Ahead Approach
by: Zhu, Xiao, et al.
Published: (2014)