miRBase: tools for microRNA genomics

miRBase: tools for microRNA genomics

miRBase is the central online repository for microRNA (miRNA) nomenclature, sequence data, annotation and target prediction. The current release (10.0) contains 5071 miRNA loci from 58 species, expressing 5922 distinct mature miRNA sequences: a growth of over 2000 sequences in the past 2 years. miRB...

Full description

Bibliographic Details
Main Authors:	Griffiths-Jones, Sam, Saini, Harpreet Kaur, van Dongen, Stijn, Enright, Anton J.
Format:	Online
Language:	English
Published:	Oxford University Press 2008
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238936/

Similar Items

miRBase: microRNA sequences, targets and gene nomenclature
by: Griffiths-Jones, Sam, et al.
Published: (2006)

miRBase Tracker: keeping track of microRNA annotation changes
by: Van Peer, Gert, et al.
Published: (2014)

miRBase: annotating high confidence microRNAs using deep sequencing data
by: Kozomara, Ana, et al.
Published: (2014)

Systematic Curation of miRBase Annotation Using Integrated Small RNA High-Throughput Sequencing Data for C. elegans and Drosophila
by: Wang, Xiangfeng, et al.
Published: (2011)

RNA editing of human microRNAs
by: Blow, Matthew J, et al.
Published: (2006)

LncRBase: An Enriched Resource for lncRNA Information
by: Chakraborty, Sohini, et al.
Published: (2014)

Evolution and function of the extended miR-2 microRNA family
by: Marco, Antonio, et al.
Published: (2012)

Large-scale analysis of microRNA evolution
by: Guerra-Assunção, José Afonso, et al.
Published: (2012)

MicroRNA targets in Drosophila
by: Enright, Anton J, et al.
Published: (2004)

Human MicroRNA Targets
by: John, Bino, et al.
Published: (2004)

piRBase: a web resource assisting piRNA functional study
by: Zhang, Peng, et al.
Published: (2014)

ViRBase: a resource for virus–host ncRNA-associated interactions
by: Li, Yanhui, et al.
Published: (2015)

Chimira: analysis of small RNA sequencing data and microRNA modifications
by: Vitsios, Dimitrios M., et al.
Published: (2015)

Using R:BASE to Construct an Auxiliary Database
by: J. James, Mancuso
Published: (1987)

Managing Interlibrary Loan Borrowing Records with R:base
by: Leah, Black
Published: (1991)

Intronic MicroRNA (miRNA)
by: Lin, Shi-Lung, et al.
Published: (2006)

MicroRNA (miRNA) in cancer
by: Reddy, Kaladhar B
Published: (2015)

Correction: Human MicroRNA Targets
by: John, Bino, et al.
Published: (2005)

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia
by: Camps, Carme, et al.
Published: (2014)

Bias in microRNA functional enrichment analysis
by: Bleazard, Thomas, et al.
Published: (2015)

MicroRNA in radiotherapy: miRage or miRador?
by: Korpela, E, et al.
Published: (2015)

Detection of microRNAs in color space
by: Marco, Antonio, et al.
Published: (2012)

Bioinformatic tools for microRNA dissection
by: Akhtar, Most Mauluda, et al.
Published: (2016)

Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
by: Leite, Daniel J., et al.
Published: (2016)

MiRmat: Mature microRNA Sequence Prediction
by: He, Chenfeng, et al.
Published: (2012)

miEAA: microRNA enrichment analysis and annotation
by: Backes, Christina, et al.
Published: (2016)

MiR-221 Influences Effector Functions and Actin Cytoskeleton in Mast Cells
by: Mayoral, Ramon J., et al.
Published: (2011)

Circulating microRNA, secreted microRNA and exogenous plant microRNA
by: Zhang, Chenyu
Published: (2012)

Conserved Temporal Patterns of MicroRNA Expression in Drosophila Support a Developmental Hourglass Model
by: Ninova, Maria, et al.
Published: (2014)

Brain microRNAs and insights into biological functions and therapeutic potential of brain enriched miRNA-128
by: Adlakha, Yogita K, et al.
Published: (2014)

Large-Scale Identification of MicroRNA Targets in Murine Dgcr8-Deficient Embryonic Stem Cell Lines
by: Davis, Matthew P. A., et al.
Published: (2012)

FRalanyzer: a tool for functional analysis of fold-recognition sequence–structure alignments
by: Saini, Harpreet Kaur, et al.
Published: (2007)

miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts.
by: Albert Pla, et al.
Published: (2018-07-01)

The Hox cluster microRNA miR-615: a case study of intronic microRNA evolution
by: Quah, Shan, et al.
Published: (2015)

A Review of Computational Tools in microRNA Discovery
by: Gomes, Clarissa P. C., et al.
Published: (2013)

Common features of microRNA target prediction tools
by: Peterson, Sarah M., et al.
Published: (2014)

Kraken: A set of tools for quality control and analysis of high-throughput sequence data☆
by: Davis, Matthew P.A., et al.
Published: (2013)

miRTarVis: an interactive visual analysis tool for microRNA-mRNA expression profile data
by: Jung, Daekyoung, et al.
Published: (2015)

MicroRNA 100: a context dependent miRNA in prostate cancer
by: Leite, Katia R. M., et al.
Published: (2013)

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences
by: Furió-Tarí, Pedro, et al.
Published: (2016)