Cross-species comparison of genome-wide expression patterns

by Zhou, Xianghong Jasmine, Gibson, Greg
Published 2004

Integrative missing value estimation for microarray data

by Hu, Jianjun, Li, Haifeng, Waterman, Michael S, Zhou, Xianghong Jasmine
Published 2006

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules

by Zhang, Shihua, Li, Qingjiao, Liu, Juan, Zhou, Xianghong Jasmine
Published 2011

Integrating many co-splicing networks to reconstruct splicing regulatory modules

by Dai, Chao, Li, Wenyuan, Liu, Juan, Zhou, Xianghong Jasmine
Published 2012

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data

by Li, Wenyuan, Zhang, Shihua, Liu, Chun-Chi, Zhou, Xianghong Jasmine
Published 2012

Network tuned multiple rank aggregation and applications to gene ranking

by Wang, Wenhui, Zhou, Xianghong Jasmine, Liu, Zhenqiu, Sun, Fengzhu
Published 2015

Comparative 3D Genome Structure Analysis of the Fission and the Budding Yeast

by Gong, Ke, Tjong, Harianto, Zhou, Xianghong Jasmine, Alber, Frank
Published 2015

Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation

by Li, Wenyuan, Liu, Chun-Chi, Zhang, Tong, Li, Haifeng, Waterman, Michael S., Zhou, Xianghong Jasmine
Published 2011

Discovery of multi-dimensional modules by integrative analysis of cancer genomic data

by Zhang, Shihua, Liu, Chun-Chi, Li, Wenyuan, Shen, Hui, Laird, Peter W., Zhou, Xianghong Jasmine
Published 2012

High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method

by Li, Wenyuan, Kang, Shuli, Liu, Chun-Chi, Zhang, Shihua, Shi, Yi, Liu, Yan, Zhou, Xianghong Jasmine
Published 2014

TopDom: an efficient and deterministic method for identifying topological domains in genomes

by Shin, Hanjun, Shi, Yi, Dai, Chao, Tjong, Harianto, Gong, Ke, Alber, Frank, Zhou, Xianghong Jasmine
Published 2016

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data

by Li, Wenyuan, Gong, Ke, Li, Qingjiao, Alber, Frank, Zhou, Xianghong Jasmine
Published 2015

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells

by Li, Jian-Rong, Sun, Chuan-Hu, Li, Wenyuan, Chao, Rou-Fang, Huang, Chieh-Chen, Zhou, Xianghong Jasmine, Liu, Chun-Chi
Published 2016

IIIDB: a database for isoform-isoform interactions and isoform network modules

by Tseng, Yu-Ting, Li, Wenyuan, Chen, Ching-Hsien, Zhang, Shihua, Chen, Jeremy JW, Zhou, Xianghong Jasmine, Liu, Chun-Chi
Published 2015

Gene Aging Nexus: a web database and data mining platform for microarray data on aging

by Pan, Fei, Chiu, Chi-Hsien, Pulapura, Sudip, Mehan, Michael R., Nunez-Iglesias, Juan, Zhang, Kangyu, Kamath, Kiran, Waterman, Michael S., Finch, Caleb E., Zhou, Xianghong Jasmine
Published 2007

DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions

by Chen, Yongheng, Chen, Chunxia, Zhang, Zhe, Liu, Chun-Chi, Johnson, Matthew E., Espinoza, Celso A., Edsall, Lee E., Ren, Bing, Zhou, Xianghong Jasmine, Grant, Struan F.A., Wells, Andrew D., Chen, Lin
Published 2015

DiseaseConnect: a comprehensive web server for mechanism-based disease–disease connections

by Liu, Chun-Chi, Tseng, Yu-Ting, Li, Wenyuan, Wu, Chia-Yu, Mayzus, Ilya, Rzhetsky, Andrey, Sun, Fengzhu, Waterman, Michael, Chen, Jeremy J. W., Chaudhary, Preet M., Loscalzo, Joseph, Crandall, Edward, Zhou, Xianghong Jasmine
Published 2014