A study of quality measures for protein threading models

by Cristobal, Susana, Zemla, Adam, Fischer, Daniel, Rychlewski, Leszek, Elofsson, Arne
Published 2001

Computational analysis of pathogen-borne metallo β-lactamases reveals discriminating structural features between B1 types

by Cadag, Eithon, Vitalis, Elizabeth, Lennox, Kristin P, Zhou, Carol L Ecale, Zemla, Adam T
Published 2012

StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase

by Zemla, Adam T, Lang, Dorothy M, Kostova, Tanya, Andino, Raul, Ecale Zhou, Carol L
Published 2011

STRALCP—structure alignment-based clustering of proteins

by Zemla, Adam, Geisbrecht, Brian, Smith, Jason, Lam, Marisa, Kirkpatrick, Bonnie, Wagner, Mark, Slezak, Tom, Zhou, Carol Ecale
Published 2007

MannDB – A microbial database of automated protein sequence analyses and evidence integration for protein characterization

by Zhou, Carol L Ecale, Lam, Marisa W, Smith, Jason R, Zemla, Adam T, Dyer, Matthew D, Kuczmarski, Thomas A, Vitalis, Elizabeth A, Slezak, Thomas R
Published 2006

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes

by Yelton, Alexis P., Thomas, Brian C., Simmons, Sheri L., Wilmes, Paul, Zemla, Adam, Thelen, Michael P., Justice, Nicholas, Banfield, Jillian F.
Published 2011

The Role of Viral Population Diversity in Adaptation of Bovine Coronavirus to New Host Environments

by Borucki, Monica K., Allen, Jonathan E., Chen-Harris, Haiyin, Zemla, Adam, Vanier, Gilda, Mabery, Shalini, Torres, Clinton, Hullinger, Pamela, Slezak, Tom
Published 2013

GeneSV – an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences

by Zemla, Adam, Kostova, Tanya, Gorchakov, Rodion, Volkova, Evgeniya, Beasley, David W. C., Cardosa, Jane, Weaver, Scott C., Vasilakis, Nikos, Naraghi-Arani, Pejman
Published 2014

Sendai virus intra-host population dynamics and host immunocompetence influence viral virulence during in vivo passage

by Peña, José, Chen-Harris, Haiyin, Allen, Jonathan E., Hwang, Mona, Elsheikh, Maher, Mabery, Shalini, Bielefeldt-Ohmann, Helle, Zemla, Adam T., Bowen, Richard A., Borucki, Monica K.
Published 2016

Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing

by Jaing, Crystal J., McLoughlin, Kevin S., Thissen, James B., Zemla, Adam, Gardner, Shea N., Vergez, Lisa M., Bourguet, Feliza, Mabery, Shalini, Fofanov, Viacheslav Y., Koshinsky, Heather, Jackson, Paul J.
Published 2016

Identification of a Novel Drug Lead That Inhibits HCV Infection and Cell-to-Cell Transmission by Targeting the HCV E2 Glycoprotein

by Al Olaby, Reem R., Cocquerel, Laurence, Zemla, Adam, Saas, Laure, Dubuisson, Jean, Vielmetter, Jost, Marcotrigiano, Joseph, Khan, Abdul Ghafoor, Catalan, Felipe Vences, Perryman, Alexander L., Freundlich, Joel S., Forli, Stefano, Levy, Shoshana, Balhorn, Rod, Azzazy, Hassan M.
Published 2014

Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm

by Stuart, Rhona K., Mayali, Xavier, Boaro, Amy A., Zemla, Adam, Everroad, R. Craig, Nilson, Daniel, Weber, Peter K., Lipton, Mary, Bebout, Brad M., Pett-Ridge, Jennifer, Thelen, Michael P.
Published 2016

Rapid Countermeasure Discovery against Francisella tularensis Based on a Metabolic Network Reconstruction

by Chaudhury, Sidhartha, Abdulhameed, Mohamed Diwan M., Singh, Narender, Tawa, Gregory J., D’haeseleer, Patrik M., Zemla, Adam T., Navid, Ali, Zhou, Carol E., Franklin, Matthew C., Cheung, Jonah, Rudolph, Michael J., Love, James, Graf, John F., Rozak, David A., Dankmeyer, Jennifer L., Amemiya, Kei, Daefler, Simon, Wallqvist, Anders
Published 2013