Integrating Information in Biological Ontologies and Molecular Networks to Infer Novel Terms

by Li, Le, Yip, Kevin Y.
Published 2016

Machine learning and genome annotation: a match meant to be?

by Yip, Kevin Y, Cheng, Chao, Gerstein, Mark
Published 2013

Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors

by Cheng, Chao, Shou, Chong, Yip, Kevin Y, Gerstein, Mark B
Published 2011

A novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps

by Hu, Xihao, Shi, Christina Huan, Yip, Kevin Y.
Published 2016

Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis

by Yip, Danny Kit-Sang, Pang, Iris K, Yip, Kevin Y
Published 2014

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics

by Smith, Andrew K, Cheung, Kei-Hoi, Yip, Kevin Y, Schultz, Martin, Gerstein, Mark B
Published 2007

A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets

by Cheng, Chao, Yan, Koon-Kiu, Yip, Kevin Y, Rozowsky, Joel, Alexander, Roger, Shou, Chong, Gerstein, Mark
Published 2011

VAS: a convenient web portal for efficient integration of genomic features with millions of genetic variants

by Ho, Eric Dun, Cao, Qin, Lee, Sau Dan, Yip, Kevin Y
Published 2014

Are special read alignment strategies necessary and cost-effective when handling sequencing reads from patient-derived tumor xenografts?

by Tso, Kai-Yuen, Lee, Sau Dan, Lo, Kwok-Wai, Yip, Kevin Y
Published 2014

Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps

by Yip, Kevin Y, Utz, Lukas, Sitwell, Simon, Hu, Xihao, Sidhu, Sachdev S, Turk, Benjamin E, Gerstein, Mark, Kim, Philip M
Published 2011

A web services choreography scenario for interoperating bioinformatics applications

by de Knikker, Remko, Guo, Youjun, Li, Jin-long, Kwan, Albert KH, Yip, Kevin Y, Cheung, David W, Cheung, Kei-Hoi
Published 2004

FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer

by Fu, Yao, Liu, Zhu, Lou, Shaoke, Bedford, Jason, Mu, Xinmeng Jasmine, Yip, Kevin Y, Khurana, Ekta, Gerstein, Mark
Published 2014

ACT: aggregation and correlation toolbox for analyses of genome tracks

by Jee, Justin, Rozowsky, Joel, Yip, Kevin Y., Lochovsky, Lucas, Bjornson, Robert, Zhong, Guoneng, Zhang, Zhengdong, Fu, Yutao, Wang, Jie, Weng, Zhiping, Gerstein, Mark
Published 2011

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

by Yip, Kevin Y, Cheng, Chao, Bhardwaj, Nitin, Brown, James B, Leng, Jing, Kundaje, Anshul, Rozowsky, Joel, Birney, Ewan, Bickel, Peter, Snyder, Michael, Gerstein, Mark
Published 2012

Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data

by Wu, Yang, Shi, Binbin, Ding, Xinqiang, Liu, Tong, Hu, Xihao, Yip, Kevin Y., Yang, Zheng Rong, Mathews, David H., Lu, Zhi John
Published 2015

A common set of distinct features that characterize noncoding RNAs across multiple species

by Hu, Long, Di, Chao, Kai, Mingxuan, Yang, Yu-Cheng T., Li, Yang, Qiu, Yunjiang, Hu, Xihao, Yip, Kevin Y., Zhang, Michael Q., Lu, Zhi John
Published 2015

Identification of a Major Determinant for Serine-Threonine Kinase Phosphoacceptor Specificity

by Chen, Catherine, Ha, Byung Hak, Thévenin, Anastasia F., Lou, Hua Jane, Zhang, Rong, Yip, Kevin Y., Peterson, Jeffrey R., Gerstein, Mark, Kim, Philip M., Filippakopoulos, Panagis, Knapp, Stefan, Boggon, Titus J., Turk, Benjamin E.
Published 2014

The Essential Component in DNA-Based Information Storage System: Robust Error-Tolerating Module

by Yim, Aldrin Kay-Yuen, Yu, Allen Chi-Shing, Li, Jing-Woei, Wong, Ada In-Chun, Loo, Jacky F. C., Chan, King Ming, Kong, S. K., Yip, Kevin Y., Chan, Ting-Fung
Published 2014

Sustained Antidiabetic Effects of a Berberine-Containing Chinese Herbal Medicine Through Regulation of Hepatic Gene Expression

by Zhao, Hai-Lu, Sui, Yi, Qiao, Chun-Feng, Yip, Kevin Y., Leung, Ross K.K., Tsui, Stephen K.W., Lee, Heung-Man, Wong, Harriet K.T., Zhu, Xun, Siu, Jennifer J., He, Lan, Guan, Jing, Liu, Li-Zhong, Xu, Hong-Xi, Tong, Peter C.Y., Chan, Juliana C.N.
Published 2012

Interactome-transcriptome analysis discovers signatures complementary to GWAS Loci of Type 2 Diabetes

by Li, Jing-Woei, Lee, Heung-Man, Wang, Ying, Tong, Amy Hin-Yan, Yip, Kevin Y., Tsui, Stephen Kwok-Wing, Lok, Si, Ozaki, Risa, Luk, Andrea O, Kong, Alice P. S., So, Wing-Yee, Ma, Ronald C. W., Chan, Juliana C. N., Chan, Ting-Fung
Published 2016