EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

by Miller, Christopher S, Baker, Brett J, Thomas, Brian C, Singer, Steven W, Banfield, Jillian F
Published 2011

Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms

by Justice, Nicholas B, Norman, Anders, Brown, Christopher T, Singh, Andrea, Thomas, Brian C, Banfield, Jillian F
Published 2014

Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third we...

by Brown, Christopher T, Sharon, Itai, Thomas, Brian C, Castelle, Cindy J, Morowitz, Michael J, Banfield, Jillian F
Published 2013

Virus-Host and CRISPR Dynamics in Archaea-Dominated Hypersaline Lake Tyrrell, Victoria, Australia

by Emerson, Joanne B., Andrade, Karen, Thomas, Brian C., Norman, Anders, Allen, Eric E., Heidelberg, Karla B., Banfield, Jillian F.
Published 2013

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

by Yelton, Alexis P, Comolli, Luis R, Justice, Nicholas B, Castelle, Cindy, Denef, Vincent J, Thomas, Brian C, Banfield, Jillian F
Published 2013

Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments

by Miller, Christopher S., Handley, Kim M., Wrighton, Kelly C., Frischkorn, Kyle R., Thomas, Brian C., Banfield, Jillian F.
Published 2013

Metabolites Associated with Adaptation of Microorganisms to an Acidophilic, Metal-Rich Environment Identified by Stable-Isotope-Enabled Metabolomics

by Mosier, Annika C., Justice, Nicholas B., Bowen, Benjamin P., Baran, Richard, Thomas, Brian C., Northen, Trent R., Banfield, Jillian F.
Published 2013

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

by Brooks, Brandon, Firek, Brian A, Miller, Christopher S, Sharon, Itai, Thomas, Brian C, Baker, Robyn, Morowitz, Michael J, Banfield, Jillian F
Published 2014

CRISPR Immunity Drives Rapid Phage Genome Evolution in Streptococcus thermophilus

by Paez-Espino, David, Sharon, Itai, Morovic, Wesley, Stahl, Buffy, Thomas, Brian C., Barrangou, Rodolphe, Banfield, Jillian F.
Published 2015

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems

by Burstein, David, Sun, Christine L., Brown, Christopher T., Sharon, Itai, Anantharaman, Karthik, Probst, Alexander J., Thomas, Brian C., Banfield, Jillian F.
Published 2016

Persisting Viral Sequences Shape Microbial CRISPR-based Immunity

by Weinberger, Ariel D., Sun, Christine L., Pluciński, Mateusz M., Denef, Vincent J., Thomas, Brian C., Horvath, Philippe, Barrangou, Rodolphe, Gilmore, Michael S., Getz, Wayne M., Banfield, Jillian F.
Published 2012

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes

by Yelton, Alexis P., Thomas, Brian C., Simmons, Sheri L., Wilmes, Paul, Zemla, Adam, Thelen, Michael P., Justice, Nicholas, Banfield, Jillian F.
Published 2011

Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla

by Kantor, Rose S., Wrighton, Kelly C., Handley, Kim M., Sharon, Itai, Hug, Laura A., Castelle, Cindy J., Thomas, Brian C., Banfield, Jillian F.
Published 2013

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

by Hug, Laura A, Castelle, Cindy J, Wrighton, Kelly C, Thomas, Brian C, Sharon, Itai, Frischkorn, Kyle R, Williams, Kenneth H, Tringe, Susannah G, Banfield, Jillian F
Published 2013

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum

by Anantharaman, Karthik, Brown, Christopher T., Burstein, David, Castelle, Cindy J., Probst, Alexander J., Thomas, Brian C., Williams, Kenneth H., Banfield, Jillian F.
Published 2016

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs

by Hu, Ping, Tom, Lauren, Singh, Andrea, Thomas, Brian C., Baker, Brett J., Piceno, Yvette M., Andersen, Gary L., Banfield, Jillian F.
Published 2016

Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development

by Raveh-Sadka, Tali, Thomas, Brian C, Singh, Andrea, Firek, Brian, Brooks, Brandon, Castelle, Cindy J, Sharon, Itai, Baker, Robyn, Good, Misty, Morowitz, Michael J, Banfield, Jillian F
Published 2015

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

by Di Rienzi, Sara C, Sharon, Itai, Wrighton, Kelly C, Koren, Omry, Hug, Laura A, Thomas, Brian C, Goodrich, Julia K, Bell, Jordana T, Spector, Timothy D, Banfield, Jillian F, Ley, Ruth E
Published 2013

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

by Castelle, Cindy J., Hug, Laura A., Wrighton, Kelly C., Thomas, Brian C., Williams, Kenneth H., Wu, Dongying, Tringe, Susannah G., Singer, Steven W., Eisen, Jonathan A., Banfield, Jillian F.
Published 2013

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

by Butterfield, Cristina N., Li, Zhou, Andeer, Peter F., Spaulding, Susan, Thomas, Brian C., Singh, Andrea, Hettich, Robert L., Suttle, Kenwyn B., Probst, Alexander J., Tringe, Susannah G., Northen, Trent, Pan, Chongle, Banfield, Jillian F.
Published 2016