Making Breast Cancer Molecular Subtypes Robust?

by Staaf, Johan, Ringnér, Markus
Published 2014

Normalization of array-CGH data: influence of copy number imbalances

by Staaf, Johan, Jönsson, Göran, Ringnér, Markus, Vallon-Christersson, Johan
Published 2007

GOBO: Gene Expression-Based Outcome for Breast Cancer Online

by Ringnér, Markus, Fredlund, Erik, Häkkinen, Jari, Borg, Åke, Staaf, Johan
Published 2011

Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer

by Staaf, Johan, Jönsson, Göran, Ringnér, Markus, Baldetorp, Bo, Borg, Åke
Published 2011

Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray

by Vallon-Christersson, Johan, Staaf, Johan, Kvist, Anders, Medstrand, Patrik, Borg, Åke, Rovira, Carlos
Published 2007

The gene expression landscape of breast cancer is shaped by tumor protein p53 status and epithelial-mesenchymal transition

by Fredlund, Erik, Staaf, Johan, Rantala, Juha K, Kallioniemi, Olli, Borg, Åke, Ringnér, Markus
Published 2012

Detailed Analysis of Focal Chromosome Arm 1q and 6p Amplifications in Urothelial Carcinoma Reveals Complex Genomic Events on 1q, and SOX4 as a Possible Auxiliary Target on 6p

by Eriksson, Pontus, Aine, Mattias, Sjödahl, Gottfrid, Staaf, Johan, Lindgren, David, Höglund, Mattias
Published 2013

Repeatability of the Maximum Standard Uptake Value (SUVmax) in FDG PET

by Lindholm, Henry, Staaf, Johan, Jacobsson, Hans, Brolin, Fredrik, Hatherly, Robert, Sânchez-Crespo, Alejandro
Published 2014

Genomic and Transcriptional Alterations in Lung Adenocarcinoma in Relation to EGFR and KRAS Mutation Status

by Planck, Maria, Edlund, Karolina, Botling, Johan, Micke, Patrick, Isaksson, Sofi, Staaf, Johan
Published 2013

DNA methylation subgroups in melanoma are associated with proliferative and immunological processes

by Lauss, Martin, Ringnér, Markus, Karlsson, Anna, Harbst, Katja, Busch, Christian, Geisler, Jürgen, Lønning, Per Eystein, Staaf, Johan, Jönsson, Göran
Published 2015

Loss of CITED1, an MITF regulator, drives a phenotype switch in vitro and can predict clinical outcome in primary melanoma tumours

by Howlin, Jillian, Cirenajwis, Helena, Lettiero, Barbara, Staaf, Johan, Lauss, Martin, Saal, Lao, Borg, Åke, Gruvberger-Saal, Sofia, Jönsson, Göran
Published 2015

Integrated Genomic and Gene Expression Profiling Identifies Two Major Genomic Circuits in Urothelial Carcinoma

by Lindgren, David, Sjödahl, Gottfrid, Lauss, Martin, Staaf, Johan, Chebil, Gunilla, Lövgren, Kristina, Gudjonsson, Sigurdur, Liedberg, Fredrik, Patschan, Oliver, Månsson, Wiking, Fernö, Mårten, Höglund, Mattias
Published 2012

Relation between smoking history and gene expression profiles in lung adenocarcinomas

by Staaf, Johan, Jönsson, Göran, Jönsson, Mats, Karlsson, Anna, Isaksson, Sofi, Salomonsson, Annette, Pettersson, Helen M, Soller, Maria, Ewers, Sven-Börje, Johansson, Leif, Jönsson, Per, Planck, Maria
Published 2012

Mutational and gene fusion analyses of primary large cell and large cell neuroendocrine lung cancer

by Karlsson, Anna, Brunnström, Hans, Lindquist, Kajsa Ericson, Jirström, Karin, Jönsson, Mats, Rosengren, Frida, Reuterswärd, Christel, Cirenajwis, Helena, Borg, Åke, Jönsson, Per, Planck, Maria, Jönsson, Göran, Staaf, Johan
Published 2015

An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cells

by Holm, Karolina, Staaf, Johan, Lauss, Martin, Aine, Mattias, Lindgren, David, Bendahl, Pär-Ola, Vallon-Christersson, Johan, Barkardottir, Rosa Bjork, Höglund, Mattias, Borg, Åke, Jönsson, Göran, Ringnér, Markus
Published 2016

High expression of ZNF703 independent of amplification indicates worse prognosis in patients with luminal B breast cancer

by Reynisdottir, Inga, Arason, Adalgeir, Einarsdottir, Berglind O, Gunnarsson, Haukur, Staaf, Johan, Vallon-Christersson, Johan, Jonsson, Goran, Ringnér, Markus, Agnarsson, Bjarni A, Olafsdottir, Kristrun, Fagerholm, Rainer, Einarsdottir, Thorbjorg, Johannesdottir, Gudrun, Johannsson, Oskar Thor, Nevanlinna, Heli, Borg, Ake, Barkardottir, Rosa Bjork
Published 2013

Molecular and genetic diversity in the metastatic process of melanoma

by Harbst, Katja, Lauss, Martin, Cirenajwis, Helena, Winter, Christof, Howlin, Jillian, Törngren, Therese, Kvist, Anders, Nodin, Björn, Olsson, Eleonor, Häkkinen, Jari, Jirström, Karin, Staaf, Johan, Lundgren, Lotta, Olsson, Håkan, Ingvar, Christian, Gruvberger-Saal, Sofia K, Saal, Lao H, Jönsson, Göran
Published 2014

Molecular stratification of metastatic melanoma using gene expression profiling : Prediction of survival outcome and benefit from molecular targeted therapy

by Cirenajwis, Helena, Ekedahl, Henrik, Lauss, Martin, Harbst, Katja, Carneiro, Ana, Enoksson, Jens, Rosengren, Frida, Werner-Hartman, Linda, Törngren, Therese, Kvist, Anders, Fredlund, Erik, Bendahl, Pär-Ola, Jirström, Karin, Lundgren, Lotta, Howlin, Jillian, Borg, Åke, Gruvberger-Saal, Sofia K., Saal, Lao H., Nielsen, Kari, Ringnér, Markus, Tsao, Hensin, Olsson, Håkan, Ingvar, Christian, Staaf, Johan, Jönsson, Göran
Published 2015

The topography of mutational processes in breast cancer genomes

by Morganella, Sandro, Alexandrov, Ludmil B., Glodzik, Dominik, Zou, Xueqing, Davies, Helen, Staaf, Johan, Sieuwerts, Anieta M., Brinkman, Arie B., Martin, Sancha, Ramakrishna, Manasa, Butler, Adam, Kim, Hyung-Yong, Borg, Åke, Sotiriou, Christos, Futreal, P. Andrew, Campbell, Peter J., Span, Paul N., Van Laere, Steven, Lakhani, Sunil R., Eyfjord, Jorunn E., Thompson, Alastair M., Stunnenberg, Hendrik G., van de Vijver, Marc J., Martens, John W. M., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Kong, Gu, Thomas, Gilles, Sale, Julian, Rada, Cristina, Stratton, Michael R., Birney, Ewan, Nik-Zainal, Serena
Published 2016

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration

by Smid, Marcel, Rodríguez-González, F. Germán, Sieuwerts, Anieta M., Salgado, Roberto, Prager-Van der Smissen, Wendy J. C., Vlugt-Daane, Michelle van der, van Galen, Anne, Nik-Zainal, Serena, Staaf, Johan, Brinkman, Arie B., van de Vijver, Marc J., Richardson, Andrea L., Fatima, Aquila, Berentsen, Kim, Butler, Adam, Martin, Sancha, Davies, Helen R., Debets, Reno, Gelder, Marion E. Meijer-Van, van Deurzen, Carolien H. M., MacGrogan, Gaëtan, Van den Eynden, Gert G. G. M., Purdie, Colin, Thompson, Alastair M., Caldas, Carlos, Span, Paul N., Simpson, Peter T., Lakhani, Sunil R., Van Laere, Steven, Desmedt, Christine, Ringnér, Markus, Tommasi, Stefania, Eyford, Jorunn, Broeks, Annegien, Vincent-Salomon, Anne, Futreal, P. Andrew, Knappskog, Stian, King, Tari, Thomas, Gilles, Viari, Alain, Langerød, Anita, Børresen-Dale, Anne-Lise, Birney, Ewan, Stunnenberg, Hendrik G., Stratton, Mike, Foekens, John A., Martens, John W. M.
Published 2016