How to link ontologies and protein–protein interactions to literature: text-mining approaches and the BioCreative experience

by Krallinger, Martin, Leitner, Florian, Vazquez, Miguel, Salgado, David, Marcelle, Christophe, Tyers, Mike, Valencia, Alfonso, Chatr-aryamontri, Andrew
Published 2012

The quail anatomy portal

by Ruparelia, Avnika A., Simkin, Johanna E., Salgado, David, Newgreen, Donald F., Martins, Gabriel G., Bryson-Richardson, Robert J.
Published 2014

UMD‐Predictor: A High‐Throughput Sequencing Compliant System for Pathogenicity Prediction of any Human cDNA Substitution

by Salgado, David, Desvignes, Jean‐Pierre, Rai, Ghadi, Blanchard, Arnaud, Miltgen, Morgane, Pinard, Amélie, Lévy, Nicolas, Collod‐Béroud, Gwenaëlle, Béroud, Christophe
Published 2016

Comparing targeted exome and whole exome approaches for genetic diagnosis of neuromuscular disorders

by Gorokhova, Svetlana, Cerino, Mathieu, Mathieu, Yves, Courrier, Sébastien, Desvignes, Jean-Pierre, Salgado, David, Béroud, Christophe, Krahn, Martin, Bartoli, Marc
Published 2015

BioCreative III interactive task: an overview

by Arighi, Cecilia N, Roberts, Phoebe M, Agarwal, Shashank, Bhattacharya, Sanmitra, Cesareni, Gianni, Chatr-aryamontri, Andrew, Clematide, Simon, Gaudet, Pascale, Giglio, Michelle Gwinn, Harrow, Ian, Huala, Eva, Krallinger, Martin, Leser, Ulf, Li, Donghui, Liu, Feifan, Lu, Zhiyong, Maltais, Lois J, Okazaki, Naoaki, Perfetto, Livia, Rinaldi, Fabio, Sætre, Rune, Salgado, David, Srinivasan, Padmini, Thomas, Philippe E, Toldo, Luca, Hirschman, Lynette, Wu, Cathy H
Published 2011

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

by Krallinger, Martin, Vazquez, Miguel, Leitner, Florian, Salgado, David, Chatr-aryamontri, Andrew, Winter, Andrew, Perfetto, Livia, Briganti, Leonardo, Licata, Luana, Iannuccelli, Marta, Castagnoli, Luisa, Cesareni, Gianni, Tyers, Mike, Schneider, Gerold, Rinaldi, Fabio, Leaman, Robert, Gonzalez, Graciela, Matos, Sergio, Kim, Sun, Wilbur, W John, Rocha, Luis, Shatkay, Hagit, Tendulkar, Ashish V, Agarwal, Shashank, Liu, Feifan, Wang, Xinglong, Rak, Rafal, Noto, Keith, Elkan, Charles, Lu, Zhiyong, Dogan, Rezarta Islamaj, Fontaine, Jean-Fred, Andrade-Navarro, Miguel A, Valencia, Alfonso
Published 2011

Overview of the interactive task in BioCreative V

by Wang, Qinghua, S. Abdul, Shabbir, Almeida, Lara, Ananiadou, Sophia, Balderas-Martínez, Yalbi I., Batista-Navarro, Riza, Campos, David, Chilton, Lucy, Chou, Hui-Jou, Contreras, Gabriela, Cooper, Laurel, Dai, Hong-Jie, Ferrell, Barbra, Fluck, Juliane, Gama-Castro, Socorro, George, Nancy, Gkoutos, Georgios, Irin, Afroza K., Jensen, Lars J., Jimenez, Silvia, Jue, Toni R., Keseler, Ingrid, Madan, Sumit, Matos, Sérgio, McQuilton, Peter, Milacic, Marija, Mort, Matthew, Natarajan, Jeyakumar, Pafilis, Evangelos, Pereira, Emiliano, Rao, Shruti, Rinaldi, Fabio, Rothfels, Karen, Salgado, David, Silva, Raquel M., Singh, Onkar, Stefancsik, Raymund, Su, Chu-Hsien, Subramani, Suresh, Tadepally, Hamsa D., Tsaprouni, Loukia, Vasilevsky, Nicole, Wang, Xiaodong, Chatr-Aryamontri, Andrew, Laulederkind, Stanley J. F., Matis-Mitchell, Sherri, McEntyre, Johanna, Orchard, Sandra, Pundir, Sangya, Rodriguez-Esteban, Raul, Van Auken, Kimberly, Lu, Zhiyong, Schaeffer, Mary, Wu, Cathy H., Hirschman, Lynette, Arighi, Cecilia N.
Published 2016

The TREAT-NMD DMD Global Database: Analysis of More than 7,000 Duchenne Muscular Dystrophy Mutations

by Bladen, Catherine L, Salgado, David, Monges, Soledad, Foncuberta, Maria E, Kekou, Kyriaki, Kosma, Konstantina, Dawkins, Hugh, Lamont, Leanne, Roy, Anna J, Chamova, Teodora, Guergueltcheva, Velina, Chan, Sophelia, Korngut, Lawrence, Campbell, Craig, Dai, Yi, Wang, Jen, Barišić, Nina, Brabec, Petr, Lahdetie, Jaana, Walter, Maggie C, Schreiber-Katz, Olivia, Karcagi, Veronika, Garami, Marta, Viswanathan, Venkatarman, Bayat, Farhad, Buccella, Filippo, Kimura, En, Koeks, Zaïda, van den Bergen, Janneke C, Rodrigues, Miriam, Roxburgh, Richard, Lusakowska, Anna, Kostera-Pruszczyk, Anna, Zimowski, Janusz, Santos, Rosário, Neagu, Elena, Artemieva, Svetlana, Rasic, Vedrana Milic, Vojinovic, Dina, Posada, Manuel, Bloetzer, Clemens, Jeannet, Pierre-Yves, Joncourt, Franziska, Díaz-Manera, Jordi, Gallardo, Eduard, Karaduman, A Ayşe, Topaloğlu, Haluk, El Sherif, Rasha, Stringer, Angela, Shatillo, Andriy V, Martin, Ann S, Peay, Holly L, Bellgard, Matthew I, Kirschner, Jan, Flanigan, Kevin M, Straub, Volker, Bushby, Kate, Verschuuren, Jan, Aartsma-Rus, Annemieke, Béroud, Christophe, Lochmüller, Hanns
Published 2015

The CHEMDNER corpus of chemicals and drugs and its annotation principles

by Krallinger, Martin, Rabal, Obdulia, Leitner, Florian, Vazquez, Miguel, Salgado, David, Lu, Zhiyong, Leaman, Robert, Lu, Yanan, Ji, Donghong, Lowe, Daniel M, Sayle, Roger A, Batista-Navarro, Riza Theresa, Rak, Rafal, Huber, Torsten, Rocktäschel, Tim, Matos, Sérgio, Campos, David, Tang, Buzhou, Xu, Hua, Munkhdalai, Tsendsuren, Ryu, Keun Ho, Ramanan, SV, Nathan, Senthil, Žitnik, Slavko, Bajec, Marko, Weber, Lutz, Irmer, Matthias, Akhondi, Saber A, Kors, Jan A, Xu, Shuo, An, Xin, Sikdar, Utpal Kumar, Ekbal, Asif, Yoshioka, Masaharu, Dieb, Thaer M, Choi, Miji, Verspoor, Karin, Khabsa, Madian, Giles, C Lee, Liu, Hongfang, Ravikumar, Komandur Elayavilli, Lamurias, Andre, Couto, Francisco M, Dai, Hong-Jie, Tsai, Richard Tzong-Han, Ata, Caglar, Can, Tolga, Usié, Anabel, Alves, Rui, Segura-Bedmar, Isabel, Martínez, Paloma, Oyarzabal, Julen, Valencia, Alfonso
Published 2015