Likelihood based observability analysis and confidence intervals for predictions of dynamic models

by Kreutz, Clemens, Raue, Andreas, Timmer, Jens
Published 2012

Experimental Design for Parameter Estimation of Gene Regulatory Networks

by Steiert, Bernhard, Raue, Andreas, Timmer, Jens, Kreutz, Clemens
Published 2012

Deciphering the mechanism behind Fibroblast Growth Factor (FGF) induced biphasic signal-response profiles

by Kanodia, Jitendra, Chai, Diana, Vollmer, Jannik, Kim, Jaeyeon, Raue, Andreas, Finn, Greg, Schoeberl, Birgit
Published 2014

CERENA: ChEmical REaction Network Analyzer—A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics

by Kazeroonian, Atefeh, Fröhlich, Fabian, Raue, Andreas, Theis, Fabian J., Hasenauer, Jan
Published 2016

In silico labeling reveals the time-dependent label half-life and transit-time in dynamical systems

by Maiwald, Thomas, Blumberg, Julie, Raue, Andreas, Hengl, Stefan, Schilling, Marcel, Sy, Sherwin KB, Becker, Verena, Klingmüller, Ursula, Timmer, Jens
Published 2012

iVUN: interactive Visualization of Uncertain biochemical reaction Networks

by Vehlow, Corinna, Hasenauer, Jan, Kramer, Andrei, Raue, Andreas, Hug, Sabine, Timmer, Jens, Radde, Nicole, Theis, Fabian J, Weiskopf, Daniel
Published 2013

Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range

by Bachmann, Julie, Raue, Andreas, Schilling, Marcel, Böhm, Martin E, Kreutz, Clemens, Kaschek, Daniel, Busch, Hauke, Gretz, Norbert, Lehmann, Wolf D, Timmer, Jens, Klingmüller, Ursula
Published 2011

Lessons Learned from Quantitative Dynamical Modeling in Systems Biology

by Raue, Andreas, Schilling, Marcel, Bachmann, Julie, Matteson, Andrew, Schelke, Max, Kaschek, Daniel, Hug, Sabine, Kreutz, Clemens, Harms, Brian D., Theis, Fabian J., Klingmüller, Ursula, Timmer, Jens
Published 2013

Correction: Lessons Learned from Quantitative Dynamical Modeling in Systems Biology

by Raue, Andreas, Schilling, Marcel, Bachmann, Julie, Matteson, Andrew, Schelker, Max, Kaschek, Daniel, Hug, Sabine, Kreutz, Clemens, Harms, Brian D., Theis, Fabian J., Klingmüller, Ursula, Timmer, Jens
Published 2013

A Systems Biology Study on NFκB Signaling in Primary Mouse Hepatocytes

by Pinna, Federico, Sahle, Sven, Beuke, Katharina, Bissinger, Michaela, Tuncay, Selcan, D’Alessandro, Lorenza A., Gauges, Ralph, Raue, Andreas, Timmer, Jens, Klingmüller, Ursula, Schirmacher, Peter, Kummer, Ursula, Breuhahn, Kai
Published 2012

Driving the Model to Its Limit: Profile Likelihood Based Model Reduction

by Maiwald, Tim, Hass, Helge, Steiert, Bernhard, Vanlier, Joep, Engesser, Raphael, Raue, Andreas, Kipkeew, Friederike, Bock, Hans H., Kaschek, Daniel, Kreutz, Clemens, Timmer, Jens
Published 2016

Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells

by Merkle, Ruth, Steiert, Bernhard, Salopiata, Florian, Depner, Sofia, Raue, Andreas, Iwamoto, Nao, Schelker, Max, Hass, Helge, Wäsch, Marvin, Böhm, Martin E., Mücke, Oliver, Lipka, Daniel B., Plass, Christoph, Lehmann, Wolf D., Kreutz, Clemens, Timmer, Jens, Schilling, Marcel, Klingmüller, Ursula
Published 2016

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

by Karr, Jonathan R., Williams, Alex H., Zucker, Jeremy D., Raue, Andreas, Steiert, Bernhard, Timmer, Jens, Kreutz, Clemens, Wilkinson, Simon, Allgood, Brandon A., Bot, Brian M., Hoff, Bruce R., Kellen, Michael R., Covert, Markus W., Stolovitzky, Gustavo A., Meyer, Pablo
Published 2015

Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling

by D’Alessandro, Lorenza A., Samaga, Regina, Maiwald, Tim, Rho, Seong-Hwan, Bonefas, Sandra, Raue, Andreas, Iwamoto, Nao, Kienast, Alexandra, Waldow, Katharina, Meyer, Rene, Schilling, Marcel, Timmer, Jens, Klamt, Steffen, Klingmüller, Ursula
Published 2015

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach

by Meyer, Pablo, Cokelaer, Thomas, Chandran, Deepak, Kim, Kyung Hyuk, Loh, Po-Ru, Tucker, George, Lipson, Mark, Berger, Bonnie, Kreutz, Clemens, Raue, Andreas, Steiert, Bernhard, Timmer, Jens, Bilal, Erhan, DREAM 6&7 Parameter Estimation consortium, Sauro, Herbert M, Stolovitzky, Gustavo, Saez-Rodriguez, Julio
Published 2014