Robust detection of alternative splicing in a population of single cells

by Welch, Joshua D., Hu, Yin, Prins, Jan F.
Published 2016

SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data

by Welch, Joshua D., Hartemink, Alexander J., Prins, Jan F.
Published 2016

Pseudogenes transcribed in breast invasive carcinoma show subtype-specific expression and ceRNA potential

by Welch, Joshua D, Baran-Gale, Jeanette, Perou, Charles M, Sethupathy, Praveen, Prins, Jan F
Published 2015

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

by Singh, Darshan, Orellana, Christian F., Hu, Yin, Jones, Corbin D., Liu, Yufeng, Chiang, Derek Y., Liu, Jinze, Prins, Jan F.
Published 2011

BlackOPs: increasing confidence in variant detection through mappability filtering

by Cabanski, Christopher R., Wilkerson, Matthew D., Soloway, Matthew, Parker, Joel S., Liu, Jinze, Prins, Jan F., Marron, J. S., Perou, Charles M., Hayes, D. Neil
Published 2013

Selective single cell isolation for genomics using microraft arrays

by Welch, Joshua D., Williams, Lindsay A., DiSalvo, Matthew, Brandt, Alicia T., Marayati, Raoud, Sims, Christopher E., Allbritton, Nancy L., Prins, Jan F., Yeh, Jen Jen, Jones, Corbin D.
Published 2016

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq

by Hu, Yin, Huang, Yan, Du, Ying, Orellana, Christian F., Singh, Darshan, Johnson, Amy R., Monroy, Anaïs, Kuan, Pei-Fen, Hammond, Scott M., Makowski, Liza, Randell, Scott H., Chiang, Derek Y., Hayes, D. Neil, Jones, Corbin, Liu, Yufeng, Prins, Jan F., Liu, Jinze
Published 2013