Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data

by Pfeifer, Nico, Lengauer, Thomas
Published 2012

Interpretable per case weighted ensemble method for cancer associations

by Jalali, Adrin, Pfeifer, Nico
Published 2016

Integrating different data types by regularized unsupervised multiple kernel learning with application to cancer subtype discovery

by Speicher, Nora K., Pfeifer, Nico
Published 2015

Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism

by Kalinina, Olga V, Pfeifer, Nico, Lengauer, Thomas
Published 2013

Family-Joining: A Fast Distance-Based Method for Constructing Generally Labeled Trees

by Kalaghatgi, Prabhav, Pfeifer, Nico, Lengauer, Thomas
Published 2016

Association Between HIV-1 Coreceptor Usage and Resistance to Broadly Neutralizing Antibodies

by Pfeifer, Nico, Walter, Hauke, Lengauer, Thomas
Published 2014

Improved therapy-success prediction with GSS estimated from clinical HIV-1 sequences

by Pironti, Alejandro, Pfeifer, Nico, Kaiser, Rolf, Walter, Hauke, Lengauer, Thomas
Published 2014

Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques

by Döring, Matthias, Gasparoni, Gilles, Gries, Jasmin, Nordström, Karl, Lutsik, Pavlo, Walter, Jörn, Pfeifer, Nico
Published 2015

A genotypic method for determining HIV-2 coreceptor usage enables epidemiological studies and clinical decision support

by Döring, Matthias, Borrego, Pedro, Büch, Joachim, Martins, Andreia, Friedrich, Georg, Camacho, Ricardo Jorge, Eberle, Josef, Kaiser, Rolf, Lengauer, Thomas, Taveira, Nuno, Pfeifer, Nico
Published 2016

CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba

by Kouri, Vivian, Khouri, Ricardo, Alemán‬, Yoan, Abrahantes, Yeissel, Vercauteren, Jurgen, Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Megens, Sarah, Moutschen, Michel, Pfeifer, Nico, Van Weyenbergh, Johan, Pérez, Ana B., Pérez, Jorge, Pérez, Lissette, Van Laethem, Kristel, Vandamme, Anne-Mieke
Published 2015

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

by Bartha, István, Carlson, Jonathan M, Brumme, Chanson J, McLaren, Paul J, Brumme, Zabrina L, John, Mina, Haas, David W, Martinez-Picado, Javier, Dalmau, Judith, López-Galíndez, Cecilio, Casado, Concepción, Rauch, Andri, Günthard, Huldrych F, Bernasconi, Enos, Vernazza, Pietro, Klimkait, Thomas, Yerly, Sabine, O’Brien, Stephen J, Listgarten, Jennifer, Pfeifer, Nico, Lippert, Christoph, Fusi, Nicolo, Kutalik, Zoltán, Allen, Todd M, Müller, Viktor, Harrigan, P Richard, Heckerman, David, Telenti, Amalio, Fellay, Jacques
Published 2013

Impact of Pre-adapted HIV Transmission

by Carlson, Jonathan M., Du, Victor Y., Pfeifer, Nico, Bansal, Anju, Tan, Vincent Y.F., Power, Karen, Brumme, Chanson J., Kreimer, Anat, DeZiel, Charles E., Fusi, Nicolo, Schaefer, Malinda, Brockman, Mark A., Gilmour, Jill, Price, Matt A., Kilembe, William, Haubrich, Richard, John, Mina, Mallal, Simon, Shapiro, Roger, Frater, John, Harrigan, P. Richard, Ndung’u, Thumbi, Allen, Susan, Heckerman, David, Sidney, John, Allen, Todd M., Goulder, Philip J.R., Brumme, Zabrina L., Hunter, Eric, Goepfert, Paul A.
Published 2016