Convergence of Free Energy Profile of Coumarin in Lipid Bilayer

by Paloncýová, Markéta, Berka, Karel, Otyepka, Michal
Published 2012

Membrane Position of Ibuprofen Agrees with Suggested Access Path Entrance to Cytochrome P450 2C9 Active Site

by Berka, Karel, Hendrychová, Tereza, Anzenbacher, Pavel, Otyepka, Michal
Published 2011

The Nature of the Binding of Au, Ag, and Pd to Benzene, Coronene, and Graphene: From Benchmark CCSD(T) Calculations to Plane-Wave DFT Calculations

by Granatier, Jaroslav, Lazar, Petr, Otyepka, Michal, Hobza, Pavel
Published 2011

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

by Petřek, Martin, Otyepka, Michal, Banáš, Pavel, Košinová, Pavlína, Koča, Jaroslav, Damborský, Jiří
Published 2006

Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles

by Zgarbová, Marie, Otyepka, Michal, Šponer, Jiří, Mládek, Arnošt, Banáš, Pavel, Cheatham, Thomas E., Jurečka, Petr
Published 2011

A cancer-derived mutation in the PSTAIRE helix of cyclin-dependent kinase 2 alters the stability of cyclin binding

by Child, Emma S., Hendrychová, Tereza, McCague, Karen, Futreal, Andy, Otyepka, Michal, Mann, David J.
Published 2010

A Computational Study of the Glycine-Rich Loop of Mitochondrial Processing Peptidase

by Kučera, Tomáš, Otyepka, Michal, Matušková, Anna, Samad, Abdul, Kutejová, Eva, Janata, Jiří
Published 2013

Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations

by Stadlbauer, Petr, Kührová, Petra, Banáš, Pavel, Koča, Jaroslav, Bussi, Giovanni, Trantírek, Lukáš, Otyepka, Michal, Šponer, Jiří
Published 2015

MOLE 2.0: advanced approach for analysis of biomacromolecular channels

by Sehnal, David, Svobodová Vařeková, Radka, Berka, Karel, Pravda, Lukáš, Navrátilová, Veronika, Banáš, Pavel, Ionescu, Crina-Maria, Otyepka, Michal, Koča, Jaroslav
Published 2013

Assessing the Current State of Amber Force Field Modifications for DNA

by Galindo-Murillo, Rodrigo, Robertson, James C., Zgarbová, Marie, Šponer, Jiří, Otyepka, Michal, Jurečka, Petr, Cheatham, Thomas E.
Published 2016

Anatomy of enzyme channels

by Pravda, Lukáš, Berka, Karel, Svobodová Vařeková, Radka, Sehnal, David, Banáš, Pavel, Laskowski, Roman A, Koča, Jaroslav, Otyepka, Michal
Published 2014

MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels

by Berka, Karel, Hanák, Ondřej, Sehnal, David, Banáš, Pavel, Navrátilová, Veronika, Jaiswal, Deepti, Ionescu, Crina-Maria, Svobodová Vařeková, Radka, Koča, Jaroslav, Otyepka, Michal
Published 2012