CAVER: a new tool to explore routes from protein clefts, pockets and cavities

by Petřek, Martin, Otyepka, Michal, Banáš, Pavel, Košinová, Pavlína, Koča, Jaroslav, Damborský, Jiří
Published 2006

Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles

by Zgarbová, Marie, Otyepka, Michal, Šponer, Jiří, Mládek, Arnošt, Banáš, Pavel, Cheatham, Thomas E., Jurečka, Petr
Published 2011

Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations

by Stadlbauer, Petr, Kührová, Petra, Banáš, Pavel, Koča, Jaroslav, Bussi, Giovanni, Trantírek, Lukáš, Otyepka, Michal, Šponer, Jiří
Published 2015

MOLE 2.0: advanced approach for analysis of biomacromolecular channels

by Sehnal, David, Svobodová Vařeková, Radka, Berka, Karel, Pravda, Lukáš, Navrátilová, Veronika, Banáš, Pavel, Ionescu, Crina-Maria, Otyepka, Michal, Koča, Jaroslav
Published 2013

Anatomy of enzyme channels

by Pravda, Lukáš, Berka, Karel, Svobodová Vařeková, Radka, Sehnal, David, Banáš, Pavel, Laskowski, Roman A, Koča, Jaroslav, Otyepka, Michal
Published 2014

MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels

by Berka, Karel, Hanák, Ondřej, Sehnal, David, Banáš, Pavel, Navrátilová, Veronika, Jaiswal, Deepti, Ionescu, Crina-Maria, Svobodová Vařeková, Radka, Koča, Jaroslav, Otyepka, Michal
Published 2012