Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts

by Lin, Chenwei, Mueller, Lukas A., Carthy, James Mc, Crouzillat, Dominique, Pétiard, Vincent, Tanksley, Steven D.
Published 2005

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota)

by Cai, Danying, Rodríguez, Flor, Teng, Yuanwen, Ané, Cécile, Bonierbale, Meredith, Mueller, Lukas A, Spooner, David M
Published 2012

From manual curation to visualization of gene families and networks across Solanaceae plant species

by Pujar, Anuradha, Menda, Naama, Bombarely, Aureliano, Edwards, Jeremy D., Strickler, Susan R., Mueller, Lukas A.
Published 2013

Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective

by Bombarely, Aureliano, Edwards, Kieron D, Sanchez-Tamburrino, Juan, Mueller, Lukas A
Published 2012

Comparative analysis of Cucurbita pepo metabolism throughout fruit development in acorn squash and oilseed pumpkin

by Wyatt, Lindsay E, Strickler, Susan R, Mueller, Lukas A, Mazourek, Michael
Published 2016

An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita

by Wyatt, Lindsay E, Strickler, Susan R, Mueller, Lukas A, Mazourek, Michael
Published 2015

Linking the potato genome to the conserved ortholog set (COS) markers

by Lindqvist-Kreuze, Hannele, Cho, Kwangsoo, Portal, Leticia, Rodríguez, Flor, Simon, Reinhard, Mueller, Lukas A, Spooner, David M, Bonierbale, Merideth
Published 2013

Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L)

by Osorio-Guarín, Jaime A., Enciso-Rodríguez, Felix E., González, Carolina, Fernández-Pozo, Noé, Mueller, Lukas A., Barrero, Luz Stella
Published 2016

Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives

by Strickler, Susan R., Bombarely, Aureliano, Munkvold, Jesse D., York, Thomas, Menda, Naama, Martin, Gregory B., Mueller, Lukas A.
Published 2015

PatMatch: a program for finding patterns in peptide and nucleotide sequences

by Yan, Thomas, Yoo, Danny, Berardini, Tanya Z., Mueller, Lukas A., Weems, Dan C., Weng, Shuai, Cherry, J. Michael, Rhee, Seung Y.
Published 2005

solGS: a web-based tool for genomic selection

by Tecle, Isaak Y, Edwards, Jeremy D, Menda, Naama, Egesi, Chiedozie, Rabbi, Ismail Y, Kulakow, Peter, Kawuki, Robert, Jannink, Jean-Luc, Mueller, Lukas A
Published 2014

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data

by Jung, Sook, Menda, Naama, Redmond, Seth, Buels, Robert M., Friesen, Maren, Bendana, Yuri, Sanderson, Lacey-Anne, Lapp, Hilmar, Lee, Taein, MacCallum, Bob, Bett, Kirstin E., Cain, Scott, Clements, Dave, Mueller, Lukas A., Main, Dorrie
Published 2011

The Genome Database for Rosaceae (GDR): year 10 update

by Jung, Sook, Ficklin, Stephen P., Lee, Taein, Cheng, Chun-Huai, Blenda, Anna, Zheng, Ping, Yu, Jing, Bombarely, Aureliano, Cho, Ilhyung, Ru, Sushan, Evans, Kate, Peace, Cameron, Abbott, Albert G., Mueller, Lukas A., Olmstead, Mercy A., Main, Dorrie
Published 2014

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

by Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A., Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S., Karp, Peter D.
Published 2016

Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

by Menda, Naama, Strickler, Susan R, Edwards, Jeremy D, Bombarely, Aureliano, Dunham, Diane M, Martin, Gregory B, Mejia, Luis, Hutton, Samuel F, Havey, Michael J, Maxwell, Douglas P, Mueller, Lukas A
Published 2014

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

by Fernandez-Pozo, Noe, Menda, Naama, Edwards, Jeremy D., Saha, Surya, Tecle, Isaak Y., Strickler, Susan R., Bombarely, Aureliano, Fisher-York, Thomas, Pujar, Anuradha, Foerster, Hartmut, Yan, Aimin, Mueller, Lukas A.
Published 2015

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

by Caspi, Ron, Altman, Tomer, Dreher, Kate, Fulcher, Carol A., Subhraveti, Pallavi, Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Pujar, Anuradha, Shearer, Alexander G., Travers, Michael, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.
Published 2012

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

by Caspi, Ron, Altman, Tomer, Billington, Richard, Dreher, Kate, Foerster, Hartmut, Fulcher, Carol A., Holland, Timothy A., Keseler, Ingrid M., Kothari, Anamika, Kubo, Aya, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S., Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.
Published 2014

Floral gene resources from basal angiosperms for comparative genomics research

by Albert, Victor A, Soltis, Douglas E, Carlson, John E, Farmerie, William G, Wall, P Kerr, Ilut, Daniel C, Solow, Teri M, Mueller, Lukas A, Landherr, Lena L, Hu, Yi, Buzgo, Matyas, Kim, Sangtae, Yoo, Mi-Jeong, Frohlich, Michael W, Perl-Treves, Rafael, Schlarbaum, Scott E, Bliss, Barbara J, Zhang, Xiaohong, Tanksley, Steven D, Oppenheimer, David G, Soltis, Pamela S, Ma, Hong, dePamphilis, Claude W, Leebens-Mack, James H
Published 2005

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

by Bombarely, Aureliano, Moser, Michel, Amrad, Avichai, Bao, Manzhu, Bapaume, Laure, Barry, Cornelius S., Bliek, Mattijs, Boersma, Maaike R., Borghi, Lorenzo, Bruggmann, Rémy, Bucher, Marcel, D'Agostino, Nunzio, Davies, Kevin, Druege, Uwe, Dudareva, Natalia, Egea-Cortines, Marcos, Delledonne, Massimo, Fernandez-Pozo, Noe, Franken, Philipp, Grandont, Laurie, Heslop-Harrison, J. S., Hintzsche, Jennifer, Johns, Mitrick, Koes, Ronald, Lv, Xiaodan, Lyons, Eric, Malla, Diwa, Martinoia, Enrico, Mattson, Neil S., Morel, Patrice, Mueller, Lukas A., Muhlemann, Joëlle, Nouri, Eva, Passeri, Valentina, Pezzotti, Mario, Qi, Qinzhou, Reinhardt, Didier, Rich, Melanie, Richert-Pöggeler, Katja R., Robbins, Tim P., Schatz, Michael C., Schranz, M. Eric, Schuurink, Robert C., Schwarzacher, Trude, Spelt, Kees, Tang, Haibao, Urbanus, Susan L., Vandenbussche, Michiel, Vijverberg, Kitty, Villarino, Gonzalo H., Warner, Ryan M., Weiss, Julia, Yue, Zhen, Zethof, Jan, Quattrocchio, Francesca, Sims, Thomas L., Kuhlemeier, Cris
Published 2016