Abundance-weighted phylogenetic diversity measures distinguish microbial community states and are robust to sampling depth

by McCoy, Connor O., Matsen, Frederick A.
Published 2013

Quantifying evolutionary constraints on B-cell affinity maturation

by McCoy, Connor O., Bedford, Trevor, Minin, Vladimir N., Bradley, Philip, Robins, Harlan, Matsen, Frederick A.
Published 2015

Phylogenomic Analysis Reveals Dynamic Evolutionary History of the Drosophila Heterochromatin Protein 1 (HP1) Gene Family

by Levine, Mia T., McCoy, Connor, Vermaak, Danielle, Lee, Yuh Chwen G., Hiatt, Mary Alice, Matsen, Frederick A., Malik, Harmit S.
Published 2012

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria

by Srinivasan, Sujatha, Hoffman, Noah G., Morgan, Martin T., Matsen, Frederick A., Fiedler, Tina L., Hall, Robert W., Ross, Frederick J., McCoy, Connor O., Bumgarner, Roger, Marrazzo, Jeanne M., Fredricks, David N.
Published 2012

HIV-1 Superinfection Occurs Less Frequently Than Initial Infection in a Cohort of High-Risk Kenyan Women

by Ronen, Keshet, McCoy, Connor O., Matsen, Frederick A., Boyd, David F., Emery, Sandra, Odem-Davis, Katherine, Jaoko, Walter, Mandaliya, Kishor, McClelland, R. Scott, Richardson, Barbra A., Overbaugh, Julie
Published 2013

Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett’s Esophagus Cohort

by Gall, Alevtina, Fero, Jutta, McCoy, Connor, Claywell, Brian C., Sanchez, Carissa A., Blount, Patricia L., Li, Xiaohong, Vaughan, Thomas L., Matsen, Frederick A., Reid, Brian J., Salama, Nina R.
Published 2015

Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections

by Salipante, Stephen J., Sengupta, Dhruba J., Rosenthal, Christopher, Costa, Gina, Spangler, Jessica, Sims, Elizabeth H., Jacobs, Michael A., Miller, Samuel I., Hoogestraat, Daniel R., Cookson, Brad T., McCoy, Connor, Matsen, Frederick A., Shendure, Jay, Lee, Clarence C., Harkins, Timothy T., Hoffman, Noah G.
Published 2013

Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial

by Edlefsen, Paul T., Rolland, Morgane, Hertz, Tomer, Tovanabutra, Sodsai, Gartland, Andrew J., deCamp, Allan C., Magaret, Craig A., Ahmed, Hasan, Gottardo, Raphael, Juraska, Michal, McCoy, Connor, Larsen, Brendan B., Sanders-Buell, Eric, Carrico, Chris, Menis, Sergey, Bose, Meera, Arroyo, Miguel A., O’Connell, Robert J., Nitayaphan, Sorachai, Pitisuttithum, Punnee, Kaewkungwal, Jaranit, Rerks-Ngarm, Supachai, Robb, Merlin L., Kirys, Tatsiana, Georgiev, Ivelin S., Kwong, Peter D., Scheffler, Konrad, Pond, Sergei L. Kosakovsky, Carlson, Jonathan M., Michael, Nelson L., Schief, William R., Mullins, James I., Kim, Jerome H., Gilbert, Peter B.
Published 2015