Intrinsic gene expression subsets of diffuse cutaneous systemic sclerosis are stable in serial skin biopsies

by Pendergrass, Sarah A., Lemaire, Raphael, Francis, Ian, Mahoney, J. Matthew, Lafyatis, Robert, Whitfield, Michael L.
Published 2012

WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning

by Sutphin, George L., Mahoney, J. Matthew, Sheppard, Keith, Walton, David O., Korstanje, Ron
Published 2016

Short-Range Temporal Interactions in Sleep; Hippocampal Spike Avalanches Support a Large Milieu of Sequential Activity Including Replay

by Mahoney, J. Matthew, Titiz, Ali S., Hernan, Amanda E., Scott, Rod C.
Published 2016

Live-cell monitoring of periodic gene expression in synchronous human cells identifies Forkhead genes involved in cell cycle control

by Grant, Gavin D., Gamsby, Joshua, Martyanov, Viktor, Brooks, Lionel, George, Lacy K., Mahoney, J. Matthew, Loros, Jennifer J., Dunlap, Jay C., Whitfield, Michael L.
Published 2012

Identification of cell cycle–regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors

by Grant, Gavin D., Brooks, Lionel, Zhang, Xiaoyang, Mahoney, J. Matthew, Martyanov, Viktor, Wood, Tammara A., Sherlock, Gavin, Cheng, Chao, Whitfield, Michael L.
Published 2013

State-Dependent Differences in Functional Connectivity in Young Children With Autism Spectrum Disorder

by Buckley, Ashura W., Scott, Rod, Tyler, Anna, Mahoney, J. Matthew, Thurm, Audrey, Farmer, Cristan, Swedo, Susan, Burroughs, Scott A., Holmes, Gregory L.
Published 2015

Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic Polymorphisms

by Mahoney, J. Matthew, Taroni, Jaclyn, Martyanov, Viktor, Wood, Tammara A., Greene, Casey S., Pioli, Patricia A., Hinchcliff, Monique E., Whitfield, Michael L.
Published 2015

Experimentally-Derived Fibroblast Gene Signatures Identify Molecular Pathways Associated with Distinct Subsets of Systemic Sclerosis Patients in Three Independent Cohorts

by Johnson, Michael E., Mahoney, J. Matthew, Taroni, Jaclyn, Sargent, Jennifer L., Marmarelis, Eleni, Wu, Ming-Ru, Varga, John, Hinchcliff, Monique E., Whitfield, Michael L.
Published 2015

Molecular Signatures in Skin Associated with Clinical Improvement During Mycophenolate Treatment in Systemic Sclerosis

by Hinchcliff, Monique, Huang, Chiang-Ching, Wood, Tammara A., Mahoney, J. Matthew, Martyanov, Viktor, Bhattacharyya, Swati, Tamaki, Zenshiro, Lee, Jungwha, Carns, Mary, Podlusky, Sofia, Sirajuddin, Arlene, Shah, Sanjiv J, Chang, Rowland W., Lafyatis, Robert, Varga, John, Whitfield, Michael L.
Published 2013

Molecular characterization of systemic sclerosis esophageal pathology identifies inflammatory and proliferative signatures

by Taroni, Jaclyn N., Martyanov, Viktor, Huang, Chiang-Ching, Mahoney, J. Matthew, Hirano, Ikuo, Shetuni, Brandon, Yang, Guang-Yu, Brenner, Darren, Jung, Barbara, Wood, Tammara A., Bhattacharyya, Swati, Almagor, Orit, Lee, Jungwha, Sirajuddin, Arlene, Varga, John, Chang, Rowland W., Whitfield, Michael L., Hinchcliff, Monique
Published 2015