Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

by Liu, Bin, Wang, Xiaolong, Chen, Qingcai, Dong, Qiwen, Lan, Xun
Published 2012

Whole Genome Sequencing Identifies a Novel Factor Required for Secretory Granule Maturation in Tetrahymena thermophila

by Kontur, Cassandra, Kumar, Santosh, Lan, Xun, Pritchard, Jonathan K., Turkewitz, Aaron P.
Published 2016

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

by Liu, Bin, Xu, Jinghao, Lan, Xun, Xu, Ruifeng, Zhou, Jiyun, Wang, Xiaolong, Chou, Kuo-Chen
Published 2014

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

by Lan, Xun, Witt, Heather, Katsumura, Koichi, Ye, Zhenqing, Wang, Qianben, Bresnick, Emery H., Farnham, Peggy J., Jin, Victor X.
Published 2012

QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions

by Liu, Bin, Yi, Jimmy, SV, Aishwarya, Lan, Xun, Ma, Yilin, Huang, Tim HM, Leone, Gustavo, Jin, Victor X
Published 2013

High Resolution Detection and Analysis of CpG Dinucleotides Methylation Using MBD-Seq Technology

by Lan, Xun, Adams, Christopher, Landers, Mark, Dudas, Miroslav, Krissinger, Daniel, Marnellos, George, Bonneville, Russell, Xu, Maoxiong, Wang, Junbai, Huang, Tim H.-M., Meredith, Gavin, Jin, Victor X.
Published 2011

Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation

by Wang, Junbai, Lan, Xun, Hsu, Pei-Yin, Hsu, Hang-Kai, Huang, Kun, Parvin, Jeffrey, Huang, Tim H-M, Jin, Victor X
Published 2013

Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors

by Ye, Zhenqing, Chen, Zhong, Lan, Xun, Hara, Stephen, Sunkel, Benjamin, Huang, Tim H.-M., Elnitski, Laura, Wang, Qianben, Jin, Victor X.
Published 2014

Ligand-dependent genomic function of glucocorticoid receptor in triple-negative breast cancer

by Chen, Zhong, Lan, Xun, Wu, Dayong, Sunkel, Benjamin, Ye, Zhenqing, Huang, Jiaoti, Liu, Zhihua, Clinton, Steven K., Jin, Victor X., Wang, Qianben
Published 2015

Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels

by Banovich, Nicholas E., Lan, Xun, McVicker, Graham, van de Geijn, Bryce, Degner, Jacob F., Blischak, John D., Roux, Julien, Pritchard, Jonathan K., Gilad, Yoav
Published 2014

LOcating Non-Unique matched Tags (LONUT) to Improve the Detection of the Enriched Regions for ChIP-seq Data

by Wang, Rui, Hsu, Hang-Kai, Blattler, Adam, Wang, Yisong, Lan, Xun, Wang, Yao, Hsu, Pei-Yin, Leu, Yu-Wei, Huang, Tim H.-M., Farnham, Peggy J., Jin, Victor X.
Published 2013