Summary of talks and papers at ISCB-Asia/SCCG 2012

by Tretyakov, Konstantin, Goldberg, Tatyana, Jin, Victor X, Horton, Paul
Published 2013

Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs

by Jin, Victor X, Singer, Gregory AC, Agosto-Pérez, Francisco J, Liyanarachchi, Sandya, Davuluri, Ramana V
Published 2006

Genome-wide Analysis of Transcription Factor E2F1 Mutant Proteins Reveals That N- and C-terminal Protein Interaction Domains Do Not Participate in Targeting E2F1 to the Human Genom...

by Cao, Alina R., Rabinovich, Roman, Xu, Maoxiong, Xu, Xiaoqin, Jin, Victor X., Farnham, Peggy J.
Published 2011

ZBTB33 binds unmethylated regions of the genome associated with actively expressed genes

by Blattler, Adam, Yao, Lijing, Wang, Yao, Ye, Zhenqing, Jin, Victor X, Farnham, Peggy J
Published 2013

Frontiers in Integrative Genomics and Translational Bioinformatics

by Zhao, Zhongming, Jin, Victor X., Huang, Yufei, Guda, Chittibabu, Ruan, Jianhua
Published 2015

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data

by Sun, Hao, Palaniswamy, Saranyan K., Pohar, Twyla T., Jin, Victor X., Huang, Tim H.-M., Davuluri, Ramana V.
Published 2006

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

by Lan, Xun, Witt, Heather, Katsumura, Koichi, Ye, Zhenqing, Wang, Qianben, Bresnick, Emery H., Farnham, Peggy J., Jin, Victor X.
Published 2012

Hierarchical Modularity in ERα Transcriptional Network Is Associated with Distinct Functions and Implicates Clinical Outcomes

by Tang, Binhua, Hsu, Hang-Kai, Hsu, Pei-Yin, Bonneville, Russell, Chen, Su-Shing, Huang, Tim H-M., Jin, Victor X.
Published 2012

QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions

by Liu, Bin, Yi, Jimmy, SV, Aishwarya, Lan, Xun, Ma, Yilin, Huang, Tim HM, Leone, Gustavo, Jin, Victor X
Published 2013

Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1

by Ye, Zhenqing, Chen, Zhong, Sunkel, Benjamin, Frietze, Seth, Huang, Tim H.-M., Wang, Qianben, Jin, Victor X.
Published 2016

ChIP-seq Defined Genome-Wide Map of TGFβ/SMAD4 Targets: Implications with Clinical Outcome of Ovarian Cancer

by Kennedy, Brian A., Deatherage, Daniel E., Gu, Fei, Tang, Binhua, Chan, Michael W. Y., Nephew, Kenneth P., Huang, Tim H-M., Jin, Victor X.
Published 2011

High Resolution Detection and Analysis of CpG Dinucleotides Methylation Using MBD-Seq Technology

by Lan, Xun, Adams, Christopher, Landers, Mark, Dudas, Miroslav, Krissinger, Daniel, Marnellos, George, Bonneville, Russell, Xu, Maoxiong, Wang, Junbai, Huang, Tim H.-M., Meredith, Gavin, Jin, Victor X.
Published 2011

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3

by Frietze, Seth, Wang, Rui, Yao, Lijing, Tak, Yu Gyoung, Ye, Zhenqing, Gaddis, Malaina, Witt, Heather, Farnham, Peggy J, Jin, Victor X
Published 2012

Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation

by Wang, Junbai, Lan, Xun, Hsu, Pei-Yin, Hsu, Hang-Kai, Huang, Kun, Parvin, Jeffrey, Huang, Tim H-M, Jin, Victor X
Published 2013

Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors

by Ye, Zhenqing, Chen, Zhong, Lan, Xun, Hara, Stephen, Sunkel, Benjamin, Huang, Tim H.-M., Elnitski, Laura, Wang, Qianben, Jin, Victor X.
Published 2014

Ligand-dependent genomic function of glucocorticoid receptor in triple-negative breast cancer

by Chen, Zhong, Lan, Xun, Wu, Dayong, Sunkel, Benjamin, Ye, Zhenqing, Huang, Jiaoti, Liu, Zhihua, Clinton, Steven K., Jin, Victor X., Wang, Qianben
Published 2015

Three-tiered role of the pioneer factor GATA2 in promoting androgen-dependent gene expression in prostate cancer

by Wu, Dayong, Sunkel, Benjamin, Chen, Zhong, Liu, Xiangtao, Ye, Zhenqing, Li, Qianjin, Grenade, Cassandra, Ke, Jingdong, Zhang, Chunpeng, Chen, Hongyan, Nephew, Kenneth P., Huang, Tim H.-M., Liu, Zhihua, Jin, Victor X., Wang, Qianben
Published 2014

LOcating Non-Unique matched Tags (LONUT) to Improve the Detection of the Enriched Regions for ChIP-seq Data

by Wang, Rui, Hsu, Hang-Kai, Blattler, Adam, Wang, Yisong, Lan, Xun, Wang, Yao, Hsu, Pei-Yin, Leu, Yu-Wei, Huang, Tim H.-M., Farnham, Peggy J., Jin, Victor X.
Published 2013

Roles of Distal and Genic Methylation in the Development of Prostate Tumorigenesis Revealed by Genome-wide DNA Methylation Analysis

by Wang, Yao, Jadhav, Rohit Ramakant, Liu, Joseph, Wilson, Desiree, Chen, Yidong, Thompson, Ian M., Troyer, Dean A., Hernandez, Javier, Shi, Huidong, Leach, Robin J., Huang, Tim H.-M., Jin, Victor X.
Published 2016

Genetic suppression reveals DNA repair-independent antagonism between BRCA1 and COBRA1 in mammary gland development

by Nair, Sreejith J., Zhang, Xiaowen, Chiang, Huai-Chin, Jahid, Md Jamiul, Wang, Yao, Garza, Paula, April, Craig, Salathia, Neeraj, Banerjee, Tapahsama, Alenazi, Fahad S., Ruan, Jianhua, Fan, Jian-Bing, Parvin, Jeffrey D., Jin, Victor X., Hu, Yanfen, Li, Rong
Published 2016