Sensitivity, specificity, and reproducibility of RNA-Seq differential expression calls

by Łabaj, Paweł P., Kreil, David P.
Published 2016

An analysis of single amino acid repeats as use case for application specific background models

by Łabaj, Paweł P, Sykacek, Peter, Kreil, David P
Published 2011

Overexpression of the transcription factor RAP2.6 leads to enhanced callose deposition in syncytia and enhanced resistance against the beet cyst nematode Heterodera schachtii in Ar...

by Ali, Muhammad Amjad, Abbas, Amjad, Kreil, David P, Bohlmann, Holger
Published 2013

The Beet Cyst Nematode Heterodera schachtii Modulates the Expression of WRKY Transcription Factors in Syncytia to Favour Its Development in Arabidopsis Roots

by Ali, Muhammad Amjad, Wieczorek, Krzysztof, Kreil, David P., Bohlmann, Holger
Published 2014

The promoter of a plant defensin gene directs specific expression in nematode-induced syncytia in Arabidopsis roots

by Siddique, Shahid, Wieczorek, Krzysztof, Szakasits, Dagmar, Kreil, David P., Bohlmann, Holger
Published 2011

Improving RNA-Seq Precision with MapAl

by Łabaj, Paweł P., Linggi, Bryan E., Wiley, H. Steven, Kreil, David P.
Published 2012

The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis☆

by Elashry, Abdelnaser, Okumoto, Sakiko, Siddique, Shahid, Koch, Wolfgang, Kreil, David P., Bohlmann, Holger
Published 2013

MALDI TOF/TOF-Based Approach for the Identification of d- Amino Acids in Biologically Active Peptides and Proteins

by Koehbach, Johannes, Gruber, Christian W., Becker, Christian, Kreil, David P., Jilek, Alexander
Published 2016

The impact of quantitative optimization of hybridization conditions on gene expression analysis

by Sykacek, Peter, Kreil, David P, Meadows, Lisa A, Auburn, Richard P, Fischer, Bettina, Russell, Steven, Micklem, Gos
Published 2011

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling

by Łabaj, Paweł P., Leparc, Germán G., Linggi, Bryan E., Markillie, Lye Meng, Wiley, H. Steven, Kreil, David P.
Published 2011

CHO microRNA engineering is growing up: Recent successes and future challenges☆

by Jadhav, Vaibhav, Hackl, Matthias, Druz, Aliaksandr, Shridhar, Smriti, Chung, Cheng-Yu, Heffner, Kelley M., Kreil, David P., Betenbaugh, Mike, Shiloach, Joseph, Barron, Niall, Grillari, Johannes, Borth, Nicole
Published 2013

Transcriptomic characterization of two major Fusarium resistance quantitative trait loci (QTLs), Fhb1 and Qfhs.ifa-5A, identifies novel candidate genes

by Schweiger, Wolfgang, Steiner, Barbara, Ametz, Christian, Siegwart, Gerald, Wiesenberger, Gerlinde, Berthiller, Franz, Lemmens, Marc, Jia, Haiyan, Adam, Gerhard, Muehlbauer, Gary J, Kreil, David P, Buerstmayr, Hermann
Published 2013

Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq

by Xu, Joshua, Su, Zhenqiang, Hong, Huixiao, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Kreil, David P., Mason, Christopher E., Tong, Weida, Shi, Leming
Published 2014

Physico-chemical foundations underpinning microarray and next-generation sequencing experiments

by Harrison, Andrew, Binder, Hans, Buhot, Arnaud, Burden, Conrad J., Carlon, Enrico, Gibas, Cynthia, Gamble, Lara J., Halperin, Avraham, Hooyberghs, Jef, Kreil, David P., Levicky, Rastislav, Noble, Peter A., Ott, Albrecht, Pettitt, B. Montgomery, Tautz, Diethard, Pozhitkov, Alexander E.
Published 2013

Detecting and correcting systematic variation in large-scale RNA sequencing data

by Li, Sheng, Łabaj, Paweł P., Zumbo, Paul, Sykacek, Peter, Shi, Wei, Shi, Leming, Phan, John, Wu, Leo, Wang, May, Wang, Charles, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Kreil, David P., Mason, Christopher E.
Published 2014

Experiences with workflows for automating data-intensive bioinformatics

by Spjuth, Ola, Bongcam-Rudloff, Erik, Hernández, Guillermo Carrasco, Forer, Lukas, Giovacchini, Mario, Guimera, Roman Valls, Kallio, Aleksi, Korpelainen, Eija, Kańduła, Maciej M, Krachunov, Milko, Kreil, David P, Kulev, Ognyan, Łabaj, Paweł P., Lampa, Samuel, Pireddu, Luca, Schönherr, Sebastian, Siretskiy, Alexey, Vassilev, Dimitar
Published 2015

Bacterial protein signals are associated with Crohn’s disease

by Juste, Catherine, Kreil, David P, Beauvallet, Christian, Guillot, Alain, Vaca, Sebastian, Carapito, Christine, Mondot, Stanislas, Sykacek, Peter, Sokol, Harry, Blon, Florence, Lepercq, Pascale, Levenez, Florence, Valot, Benoît, Carré, Wilfrid, Loux, Valentin, Pons, Nicolas, David, Olivier, Schaeffer, Brigitte, Lepage, Patricia, Martin, Patrice, Monnet, Véronique, Seksik, Philippe, Beaugerie, Laurent, Ehrlich, S Dusko, Gibrat, Jean-François, Van Dorsselaer, Alain, Doré, Joël
Published 2014