Practical guidelines for B-cell receptor repertoire sequencing analysis

by Yaari, Gur, Kleinstein, Steven H.
Published 2015

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

by Yaari, Gur, Uduman, Mohamed, Kleinstein, Steven H.
Published 2012

Cell subset prediction for blood genomic studies

by Bolen, Christopher R, Uduman, Mohamed, Kleinstein, Steven H
Published 2011

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations

by Yaari, Gur, Bolen, Christopher R., Thakar, Juilee, Kleinstein, Steven H.
Published 2013

Detecting selection in immunoglobulin sequences

by Uduman, Mohamed, Yaari, Gur, Hershberg, Uri, Stern, Jacob A., Shlomchik, Mark J., Kleinstein, Steven H.
Published 2011

Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism

by Thakar, Juilee, Hartmann, Boris M., Marjanovic, Nada, Sealfon, Stuart C., Kleinstein, Steven H.
Published 2015

RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2

by Maman, Yaakov, Teng, Grace, Seth, Rashu, Kleinstein, Steven H., Schatz, David G.
Published 2016

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection

by Zaslavsky, Elena, Nudelman, German, Marquez, Susanna, Hershberg, Uri, Hartmann, Boris M, Thakar, Juilee, Sealfon, Stuart C, Kleinstein, Steven H
Published 2013

The transcription factors ZEB2 and T-bet cooperate to program cytotoxic T cell terminal differentiation in response to LCMV viral infection

by Dominguez, Claudia X., Amezquita, Robert A., Guan, Tianxia, Marshall, Heather D., Joshi, Nikhil S., Kleinstein, Steven H., Kaech, Susan M.
Published 2015

Coregulation mapping based on individual phenotypic variation in response to virus infection

by Nudelman, German, Ge, Yongchao, Hu, Jianzhong, Kumar, Madhu, Seto, Jeremy, Duke, Jamie L, Kleinstein, Steven H, Hayot, Fernand, Sealfon, Stuart C, Wetmur, James G
Published 2010

CD80 and PD-L2 define functionally distinct memory B cell subsets that are independent of antibody isotype

by Zuccarino-Catania, Griselda V., Sadanand, Saheli, Weisel, Florian J., Tomayko, Mary M., Meng, Hailong, Kleinstein, Steven H., Good-Jacobson, Kim L., Shlomchik, Mark J.
Published 2014

Influence of seasonal exposure to grass pollen on local and peripheral blood IgE repertoires in patients with allergic rhinitis

by Wu, Yu-Chang B., James, Louisa K., Vander Heiden, Jason A., Uduman, Mohamed, Durham, Stephen R., Kleinstein, Steven H., Kipling, David, Gould, Hannah J.
Published 2014

Age‐associated vascular inflammation promotes monocytosis during atherogenesis

by Du, Wei, Wong, Christine, Song, Yang, Shen, Hua, Mori, Daniel, Rotllan, Noemi, Price, Nathan, Dobrian, Anca D., Meng, Hailong, Kleinstein, Steven H., Fernandez‐Hernando, Carlos, Goldstein, Daniel R.
Published 2016

Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data

by Yaari, Gur, Vander Heiden, Jason A., Uduman, Mohamed, Gadala-Maria, Daniel, Gupta, Namita, Stern, Joel N. H., O’Connor, Kevin C., Hafler, David A., Laserson, Uri, Vigneault, Francois, Kleinstein, Steven H.
Published 2013

Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells

by Rubelt, Florian, Bolen, Christopher R., McGuire, Helen M., Heiden, Jason A. Vander, Gadala-Maria, Daniel, Levin, Mikhail, M. Euskirchen, Ghia, Mamedov, Murad R., Swan, Gary E., Dekker, Cornelia L., Cowell, Lindsay G., Kleinstein, Steven H., Davis, Mark M.
Published 2016

Corrigendum: Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protection

by Bohannon, Caitlin, Powers, Ryan, Satyabhama, Lakshmipriyadarshini, Cui, Ang, Tipton, Christopher, Michaeli, Miri, Skountzou, Ioanna, Mittler, Robert S., Kleinstein, Steven H., Mehr, Ramit, Lee, Frances Eun-Hyung, Sanz, Ignacio, Jacob, Joshy
Published 2016

Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protection

by Bohannon, Caitlin, Powers, Ryan, Satyabhama, Lakshmipriyadarshini, Cui, Ang, Tipton, Christopher, Michaeli, Miri, Skountzou, Ioanna, Mittler, Robert S., Kleinstein, Steven H., Mehr, Ramit, Lee, Frances Eun-Yun, Sanz, Ignacio, Jacob, Joshy
Published 2016

Generation of Long-Lived Bone Marrow Plasma Cells Secreting Antibodies Specific for the HIV-1 gp41 Membrane-Proximal External Region in the Absence of Polyreactivity

by Donius, Luke R., Cheng, Yuxing, Choi, Jaewon, Sun, Zhen-Yu J., Hanson, Melissa, Zhang, Michael, Gierahn, Todd M., Marquez, Susanna, Uduman, Mohammed, Kleinstein, Steven H., Irvine, Darrell, Love, J. Christopher, Reinherz, Ellis L., Kim, Mikyung
Published 2016

Responsive population dynamics and wide seeding into the duodenal lamina propria of transglutaminase-2-specific plasma cells in celiac disease

by Di Niro, R, Snir, O, Kaukinen, K, Yaari, G, Lundin, K E A, Gupta, N T, Kleinstein, S H, Cols, M, Cerutti, A, Mäki, M, Shlomchik, M J, Sollid, L M
Published 2016

NLRP10 is a NOD-like receptor essential to initiate adaptive immunity by dendritic cells

by Eisenbarth, Stephanie C., Williams, Adam, Colegio, Oscar R., Meng, Hailong, Strowig, Till, Rongvaux, Anthony, Henao-Mejia, Jorge, Thaiss, Christoph A., Joly, Sophie, Gonzalez, David, Xu, Lan, Zenewicz, Lauren A., Haberman, Ann M., Elinav, Eran, Kleinstein, Steven H., Sutterwala, Fayyaz S., Flavell, Richard A.
Published 2012