GEMS: a web server for biclustering analysis of expression data

by Wu, Chang-Jiun, Kasif, Simon
Published 2005

To Supplement or Not to Supplement: A Metabolic Network Framework for Human Nutritional Supplements

by Nogiec, Christopher D., Kasif, Simon
Published 2013

Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes

by Lee, Soohyun, Kohane, Isaac, Kasif, Simon
Published 2005

Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data

by Nariai, Naoki, Kolaczyk, Eric D., Kasif, Simon
Published 2007

Segmentally Variable Genes:A New Perspective on Adaptation

by Zheng, Yu, Roberts, Richard J, Kasif, Simon
Published 2004

Genomic functional annotation using co-evolution profiles of gene clusters

by Zheng, Yu, Roberts, Richard J, Kasif, Simon
Published 2002

Phylogenetic detection of conserved gene clusters in microbial genomes

by Zheng, Yu, Anton, Brian P, Roberts, Richard J, Kasif, Simon
Published 2005

MuPlex: multi-objective multiplex PCR assay design

by Rachlin, John, Ding, Chunming, Cantor, Charles, Kasif, Simon
Published 2005

Computational tradeoffs in multiplex PCR assay design for SNP genotyping

by Rachlin, John, Ding, Chunming, Cantor, Charles, Kasif, Simon
Published 2005

Biological context networks: a mosaic view of the interactome

by Rachlin, John, Cohen, Dikla Dotan, Cantor, Charles, Kasif, Simon
Published 2006

Objective: biochemical function

by Anton, Brian P., Kasif, Simon, Roberts, Richard J., Steffen, Martin
Published 2014

Towards the identification of essential genes using targeted genome sequencing and comparative analysis

by Gustafson, Adam M, Snitkin, Evan S, Parker, Stephen CJ, DeLisi, Charles, Kasif, Simon
Published 2006

Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes

by Nogiec, Christopher, Burkart, Alison, Dreyfuss, Jonathan M., Lerin, Carles, Kasif, Simon, Patti, Mary-Elizabeth
Published 2015

Identification of rare germline copy number variations over-represented in five human cancer types

by Park, Richard W, Kim, Tae-Min, Kasif, Simon, Park, Peter J
Published 2015

Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models

by Liu, Manway, Liberzon, Arthur, Kong, Sek Won, Lai, Weil R, Park, Peter J, Kohane, Isaac S, Kasif, Simon
Published 2007

Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles

by Faith, Jeremiah J, Hayete, Boris, Thaden, Joshua T, Mogno, Ilaria, Wierzbowski, Jamey, Cottarel, Guillaume, Kasif, Simon, Collins, James J, Gardner, Timothy S
Published 2007

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps

by Chang, Yi-Chien, Hu, Zhenjun, Rachlin, John, Anton, Brian P., Kasif, Simon, Roberts, Richard J., Steffen, Martin
Published 2016

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori

by Choi, Han-Pil, Juarez, Silvia, Ciordia, Sergio, Fernandez, Marisol, Bargiela, Rafael, Albar, Juan P., Mazumdar, Varun, Anton, Brian P., Kasif, Simon, Ferrer, Manuel, Steffen, Martin
Published 2013

Thousands of missed genes found in bacterial genomes and their analysis with COMBREX

by Wood, Derrick E, Lin, Henry, Levy-Moonshine, Ami, Swaminathan, Rajiswari, Chang, Yi-Chien, Anton, Brian P, Osmani, Lais, Steffen, Martin, Kasif, Simon, Salzberg, Steven L
Published 2012

Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease

by Liu, Bo, Faller, Lina L., Klitgord, Niels, Mazumdar, Varun, Ghodsi, Mohammad, Sommer, Daniel D., Gibbons, Theodore R., Treangen, Todd J., Chang, Yi-Chien, Li, Shan, Stine, O. Colin, Hasturk, Hatice, Kasif, Simon, Segrè, Daniel, Pop, Mihai, Amar, Salomon
Published 2012