How Next-Generation Sequencing and Multiscale Data Analysis Will Transform Infectious Disease Management

by Pak, Theodore R., Kasarskis, Andrew
Published 2015

Analytical validation of whole exome and whole genome sequencing for clinical applications

by Linderman, Michael D, Brandt, Tracy, Edelmann, Lisa, Jabado, Omar, Kasai, Yumi, Kornreich, Ruth, Mahajan, Milind, Shah, Hardik, Kasarskis, Andrew, Schadt, Eric E
Published 2014

Informed decision-making among students analyzing their personal genomes on a whole genome sequencing course: a longitudinal cohort study

by Sanderson, Saskia C, Linderman, Michael D, Kasarskis, Andrew, Bashir, Ali, Diaz, George A, Mahajan, Milind C, Shah, Hardik, Wasserstein, Melissa, Zinberg, Randi E, Zweig, Micol, Schadt, Eric E
Published 2013

Preparing the next generation of genomicists: a laboratory-style course in medical genomics

by Linderman, Michael D., Bashir, Ali, Diaz, George A., Kasarskis, Andrew, Sanderson, Saskia C., Zinberg, Randi E., Mahajan, Milind, Shah, Hardik, Suckiel, Sabrina, Zweig, Micol, Schadt, Eric E.
Published 2015

EHDViz: clinical dashboard development using open-source technologies

by Badgeley, Marcus A, Shameer, Khader, Glicksberg, Benjamin S, Tomlinson, Max S, Levin, Matthew A, McCormick, Patrick J, Kasarskis, Andrew, Reich, David L, Dudley, Joel T
Published 2016

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193

by Sheppard, Anna E., Stoesser, Nicole, Sebra, Robert, Kasarskis, Andrew, Deikus, Gintaras, Anson, Luke, Walker, A. Sarah, Peto, Tim E., Crook, Derrick W., Mathers, Amy J.
Published 2016

Motivations, concerns and preferences of personal genome sequencing research participants: Baseline findings from the HealthSeq project

by Sanderson, Saskia C, Linderman, Michael D, Suckiel, Sabrina A, Diaz, George A, Zinberg, Randi E, Ferryman, Kadija, Wasserstein, Melissa, Kasarskis, Andrew, Schadt, Eric E
Published 2016

Systems Genetic Analyses Highlight a TGFβ-FOXO3 Dependent Striatal Astrocyte Network Conserved across Species and Associated with Stress, Sleep, and Huntington’s Disease

by Scarpa, Joseph R., Jiang, Peng, Losic, Bojan, Readhead, Ben, Gao, Vance D., Dudley, Joel T., Vitaterna, Martha H., Turek, Fred W., Kasarskis, Andrew
Published 2016

First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131

by Stoesser, Nicole, Sheppard, Anna E., Peirano, Gisele, Sebra, Robert P., Lynch, Tarah, Anson, Luke W., Kasarskis, Andrew, Motyl, Mary R., Crook, Derrick W., Pitout, Johann D.
Published 2016

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing

by Mathers, Amy J., Stoesser, Nicole, Sheppard, Anna E., Pankhurst, Louise, Giess, Adam, Yeh, Anthony J., Didelot, Xavier, Turner, Stephen D., Sebra, Robert, Kasarskis, Andrew, Peto, Tim, Crook, Derrick, Sifri, Costi D.
Published 2015

Blood and Intestine eQTLs from an Anti-TNF-Resistant Crohn's Disease Cohort Inform IBD Genetic Association Loci

by Di Narzo, Antonio F, Peters, Lauren A, Argmann, Carmen, Stojmirovic, Aleksandar, Perrigoue, Jacqueline, Li, Katherine, Telesco, Shannon, Kidd, Brian, Walker, Jennifer, Dudley, Joel, Cho, Judy, Schadt, Eric E, Kasarskis, Andrew, Curran, Mark, Dobrin, Radu, Hao, Ke
Published 2016

A comprehensive transcript index of the human genome generated using microarrays and computational approaches

by Schadt, Eric E, Edwards, Stephen W, GuhaThakurta, Debraj, Holder, Dan, Ying, Lisa, Svetnik, Vladimir, Leonardson, Amy, Hart, Kyle W, Russell, Archie, Li, Guoya, Cavet, Guy, Castle, John, McDonagh, Paul, Kan, Zhengyan, Chen, Ronghua, Kasarskis, Andrew, Margarint, Mihai, Caceres, Ramon M, Johnson, Jason M, Armour, Christopher D, Garrett-Engele, Philip W, Tsinoremas, Nicholas F, Shoemaker, Daniel D
Published 2004

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

by Stoesser, Nicole, Sheppard, Anna E., Pankhurst, Louise, De Maio, Nicola, Moore, Catrin E., Sebra, Robert, Turner, Paul, Anson, Luke W., Kasarskis, Andrew, Batty, Elizabeth M., Kos, Veronica, Wilson, Daniel J., Phetsouvanh, Rattanaphone, Wyllie, David, Sokurenko, Evgeni, Manges, Amee R., Johnson, Timothy J., Price, Lance B., Peto, Timothy E. A., Johnson, James R., Didelot, Xavier, Walker, A. Sarah, Crook, Derrick W.
Published 2016

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

by Sheppard, Anna E., Stoesser, Nicole, Wilson, Daniel J., Sebra, Robert, Kasarskis, Andrew, Anson, Luke W., Giess, Adam, Pankhurst, Louise J., Vaughan, Alison, Grim, Christopher J., Cox, Heather L., Yeh, Anthony J., Sifri, Costi D., Walker, A. Sarah, Peto, Tim E., Crook, Derrick W., Mathers, Amy J.
Published 2016

Development and clinical application of an integrative genomic approach to personalized cancer therapy

by Uzilov, Andrew V., Ding, Wei, Fink, Marc Y., Antipin, Yevgeniy, Brohl, Andrew S., Davis, Claire, Lau, Chun Yee, Pandya, Chetanya, Shah, Hardik, Kasai, Yumi, Powell, James, Micchelli, Mark, Castellanos, Rafael, Zhang, Zhongyang, Linderman, Michael, Kinoshita, Yayoi, Zweig, Micol, Raustad, Katie, Cheung, Kakit, Castillo, Diane, Wooten, Melissa, Bourzgui, Imane, Newman, Leah C., Deikus, Gintaras, Mathew, Bino, Zhu, Jun, Glicksberg, Benjamin S., Moe, Aye S., Liao, Jun, Edelmann, Lisa, Dudley, Joel T., Maki, Robert G., Kasarskis, Andrew, Holcombe, Randall F., Mahajan, Milind, Hao, Ke, Reva, Boris, Longtine, Janina, Starcevic, Daniela, Sebra, Robert, Donovan, Michael J., Li, Shuyu, Schadt, Eric E., Chen, Rong
Published 2016