SIMAGE: simulation of DNA-microarray gene expression data

by Albers, Casper J, Jansen, Ritsert C, Kok, Jan, Kuipers, Oscar P, van Hijum, Sacha AFT
Published 2006

Sequence Polymorphisms Cause Many False cis eQTLs

by Alberts, Rudi, Terpstra, Peter, Li, Yang, Breitling, Rainer, Nap, Jan-Peter, Jansen, Ritsert C.
Published 2007

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat

by Alberts, Rudi, Terpstra, Peter, Hardonk, Menno, Bystrykh, Leonid V, de Haan, Gerald, Breitling, Rainer, Nap, Jan-Peter, Jansen, Ritsert C
Published 2007

xQTL workbench: a scalable web environment for multi-level QTL analysis

by Arends, Danny, van der Velde, K. Joeri, Prins, Pjotr, Broman, Karl W., Möller, Steffen, Jansen, Ritsert C., Swertz, Morris A.
Published 2012

Quantile-Based Permutation Thresholds for Quantitative Trait Loci Hotspots

by Neto, Elias Chaibub, Keller, Mark P., Broman, Andrew F., Attie, Alan D., Jansen, Ritsert C., Broman, Karl W., Yandell, Brian S.
Published 2012

Worm variation made accessible: Take your shopping cart to store, link, and investigate!

by Snoek, L Basten, Joeri van der Velde, K, Li, Yang, Jansen, Ritsert C, Swertz, Morris A, Kammenga, Jan E
Published 2014

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains

by Zych, Konrad, Li, Yang, van der Velde, Joeri K, Joosen, Ronny VL, Ligterink, Wilco, Jansen, Ritsert C, Arends, Danny
Published 2015

Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needs

by Durrant, Caroline, Swertz, Morris A., Alberts, Rudi, Arends, Danny, Möller, Steffen, Mott, Richard, Prins, Pjotr, van der Velde, K. Joeri, Jansen, Ritsert C., Schughart, Klaus
Published 2012

WormQTLHD—a web database for linking human disease to natural variation data in C. elegans

by van der Velde, K. Joeri, de Haan, Mark, Zych, Konrad, Arends, Danny, Snoek, L. Basten, Kammenga, Jan E., Jansen, Ritsert C., Swertz, Morris A., Li, Yang
Published 2014

Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans

by Li, Yang, Álvarez, Olga Alda, Gutteling, Evert W, Tijsterman, Marcel, Fu, Jingyuan, Riksen, Joost A. G, Hazendonk, Esther, Prins, Pjotr, Plasterk, Ronald H. A, Jansen, Ritsert C, Breitling, Rainer, Kammenga, Jan E
Published 2006

Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression

by Fu, Jingyuan, Wolfs, Marcel G. M., Deelen, Patrick, Westra, Harm-Jan, Fehrmann, Rudolf S. N., te Meerman, Gerard J., Buurman, Wim A., Rensen, Sander S. M., Groen, Harry J. M., Weersma, Rinse K., van den Berg, Leonard H., Veldink, Jan, Ophoff, Roel A., Snieder, Harold, van Heel, David, Jansen, Ritsert C., Hofker, Marten H., Wijmenga, Cisca, Franke, Lude
Published 2012

WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp

by Snoek, L. Basten, Van der Velde, K. Joeri, Arends, Danny, Li, Yang, Beyer, Antje, Elvin, Mark, Fisher, Jasmin, Hajnal, Alex, Hengartner, Michael O., Poulin, Gino B., Rodriguez, Miriam, Schmid, Tobias, Schrimpf, Sabine, Xue, Feng, Jansen, Ritsert C., Kammenga, Jan E., Swertz, Morris A.
Published 2013

Trans-eQTLs Reveal That Independent Genetic Variants Associated with a Complex Phenotype Converge on Intermediate Genes, with a Major Role for the HLA

by Fehrmann, Rudolf S. N., Jansen, Ritsert C., Veldink, Jan H., Westra, Harm-Jan, Arends, Danny, Bonder, Marc Jan, Fu, Jingyuan, Deelen, Patrick, Groen, Harry J. M., Smolonska, Asia, Weersma, Rinse K., Hofstra, Robert M. W., Buurman, Wim A., Rensen, Sander, Wolfs, Marcel G. M., Platteel, Mathieu, Zhernakova, Alexandra, Elbers, Clara C., Festen, Eleanora M., Trynka, Gosia, Hofker, Marten H., Saris, Christiaan G. J., Ophoff, Roel A., van den Berg, Leonard H., van Heel, David A., Wijmenga, Cisca, te Meerman, Gerard J., Franke, Lude
Published 2011

Mapping of Gene Expression Reveals CYP27A1 as a Susceptibility Gene for Sporadic ALS

by Diekstra, Frank P., Saris, Christiaan G. J., van Rheenen, Wouter, Franke, Lude, Jansen, Ritsert C., van Es, Michael A., van Vught, Paul W. J., Blauw, Hylke M., Groen, Ewout J. N., Horvath, Steve, Estrada, Karol, Rivadeneira, Fernando, Hofman, Albert, Uitterlinden, Andre G., Robberecht, Wim, Andersen, Peter M., Melki, Judith, Meininger, Vincent, Hardiman, Orla, Landers, John E., Brown, Robert H., Shatunov, Aleksey, Shaw, Christopher E., Leigh, P. Nigel, Al-Chalabi, Ammar, Ophoff, Roel A., van den Berg, Leonard H., Veldink, Jan H.
Published 2012

Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations

by Demirkan, Ayşe, van Duijn, Cornelia M., Ugocsai, Peter, Isaacs, Aaron, Pramstaller, Peter P., Liebisch, Gerhard, Wilson, James F., Johansson, Åsa, Rudan, Igor, Aulchenko, Yurii S., Kirichenko, Anatoly V., Janssens, A. Cecile J. W., Jansen, Ritsert C., Gnewuch, Carsten, Domingues, Francisco S., Pattaro, Cristian, Wild, Sarah H., Jonasson, Inger, Polasek, Ozren, Zorkoltseva, Irina V., Hofman, Albert, Karssen, Lennart C., Struchalin, Maksim, Floyd, James, Igl, Wilmar, Biloglav, Zrinka, Broer, Linda, Pfeufer, Arne, Pichler, Irene, Campbell, Susan, Zaboli, Ghazal, Kolcic, Ivana, Rivadeneira, Fernando, Huffman, Jennifer, Hastie, Nicholas D., Uitterlinden, Andre, Franke, Lude, Franklin, Christopher S., Vitart, Veronique, Nelson, Christopher P., Preuss, Michael, Bis, Joshua C., O'Donnell, Christopher J., Franceschini, Nora, Witteman, Jacqueline C. M., Axenovich, Tatiana, Oostra, Ben A., Meitinger, Thomas, Hicks, Andrew A., Hayward, Caroline, Wright, Alan F., Gyllensten, Ulf, Campbell, Harry, Schmitz, Gerd
Published 2012

Cell Specific eQTL Analysis without Sorting Cells

by Westra, Harm-Jan, Arends, Danny, Esko, Tõnu, Peters, Marjolein J., Schurmann, Claudia, Schramm, Katharina, Kettunen, Johannes, Yaghootkar, Hanieh, Fairfax, Benjamin P., Andiappan, Anand Kumar, Li, Yang, Fu, Jingyuan, Karjalainen, Juha, Platteel, Mathieu, Visschedijk, Marijn, Weersma, Rinse K., Kasela, Silva, Milani, Lili, Tserel, Liina, Peterson, Pärt, Reinmaa, Eva, Hofman, Albert, Uitterlinden, André G., Rivadeneira, Fernando, Homuth, Georg, Petersmann, Astrid, Lorbeer, Roberto, Prokisch, Holger, Meitinger, Thomas, Herder, Christian, Roden, Michael, Grallert, Harald, Ripatti, Samuli, Perola, Markus, Wood, Andrew R., Melzer, David, Ferrucci, Luigi, Singleton, Andrew B., Hernandez, Dena G., Knight, Julian C., Melchiotti, Rossella, Lee, Bernett, Poidinger, Michael, Zolezzi, Francesca, Larbi, Anis, Wang, De Yun, van den Berg, Leonard H., Veldink, Jan H., Rotzschke, Olaf, Makino, Seiko, Salomaa, Veikko, Strauch, Konstantin, Völker, Uwe, van Meurs, Joyce B. J., Metspalu, Andres, Wijmenga, Cisca, Jansen, Ritsert C., Franke, Lude
Published 2015