Systematic analysis of chromatin state dynamics in nine human cell types

by Ernst, Jason, Kheradpour, Pouya, Mikkelsen, Tarjei S., Shoresh, Noam, Ward, Lucas D., Epstein, Charles B., Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael, Ku, Manching, Durham, Timothy, Kellis, Manolis, Bernstein, Bradley E.
Published 2011

Genome-wide map of quantified epigenetic changes during in vitro chondrogenic differentiation of primary human mesenchymal stem cells

by Herlofsen, Sarah R, Bryne, Jan Christian, Høiby, Torill, Wang, Li, Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael J, Boyle, Patrick, Gu, Hongcang, Meza-Zepeda, Leonardo A, Collas, Philippe, Mikkelsen, Tarjei S, Brinchmann, Jan E
Published 2013

Impact of sequencing depth in ChIP-seq experiments

by Jung, Youngsook L., Luquette, Lovelace J., Ho, Joshua W.K., Ferrari, Francesco, Tolstorukov, Michael, Minoda, Aki, Issner, Robbyn, Epstein, Charles B., Karpen, Gary H., Kuroda, Mitzi I., Park, Peter J.
Published 2014

Identification of nuclear hormone receptor pathways causing insulin resistance by transcriptional and epigenomic analysis

by Kang, Sona, Tsai, Linus T., Zhou, Yiming, Evertts, Adam, Xu, Su, Griffin, Michael J., Issner, Robbyn, Whitton, Holly J., Garcia, Benjamin A., Epstein, Charles B., Mikkelsen, Tarjei S., Rosen, Evan D.
Published 2014

Dissecting neural differentiation regulatory networks through epigenetic footprinting

by Ziller, Michael J., Edri, Reuven, Yaffe, Yakey, Donaghey, Julie, Pop, Ramona, Mallard, William, Issner, Robbyn, Gifford, Casey A., Goren, Alon, Xing, Jeff, Gu, Hongcang, Cachiarelli, Davide, Tsankov, Alexander, Epstein, Chuck, Rinn, John R., Mikkelsen, Tarjei S., Kohlbacher, Oliver, Gnirke, Andreas, Bernstein, Bradley E., Elkabetz, Yechiel, Meissner, Alexander
Published 2014