Investigating the Relation between Stochastic Differentiation, Homeostasis and Clonal Expansion in Intestinal Crypts via Multiscale Modeling

by Graudenzi, Alex, Caravagna, Giulio, De Matteis, Giovanni, Antoniotti, Marco
Published 2014

CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

by Rubinacci, Simone, Graudenzi, Alex, Caravagna, Giulio, Mauri, Giancarlo, Osborne, James, Pitt-Francis, Joe, Antoniotti, Marco
Published 2015

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

by Paroni, Andrea, Graudenzi, Alex, Caravagna, Giulio, Damiani, Chiara, Mauri, Giancarlo, Antoniotti, Marco
Published 2016

Inferring Tree Causal Models of Cancer Progression with Probability Raising

by Loohuis, Loes Olde, Caravagna, Giulio, Graudenzi, Alex, Ramazzotti, Daniele, Mauri, Giancarlo, Antoniotti, Marco, Mishra, Bud
Published 2014

Growth and Division in a Dynamic Protocell Model

by Villani, Marco, Filisetti, Alessandro, Graudenzi, Alex, Damiani, Chiara, Carletti, Timoteo, Serra, Roberto
Published 2014