Imputation methods for missing data for polygenic models

by Fridley, Brooke, Rabe, Kari, Andrade, Mariza de
Published 2003

Identifying the Genetic Variation of Gene Expression Using Gene Sets: Application of Novel Gene Set eQTL Approach to PharmGKB and KEGG

by Abo, Ryan, Jenkins, Gregory D., Wang, Liewei, Fridley, Brooke L.
Published 2012

Use of the gamma method for self-contained gene-set analysis of SNP data

by Biernacka, Joanna M, Jenkins, Gregory D, Wang, Liewei, Moyer, Ann M, Fridley, Brooke L
Published 2012

Genetic Association Studies of Copy-Number Variation: Should Assignment of Copy Number States Precede Testing?

by Breheny, Patrick, Chalise, Prabhakar, Batzler, Anthony, Wang, Liewei, Fridley, Brooke L.
Published 2012

Localization of Association Signal from Risk and Protective Variants in Sequencing Studies

by Brisbin, Abra, Jenkins, Gregory D., Ellsworth, Katarzyna A., Wang, Liewei, Fridley, Brooke L.
Published 2012

A Latent Model for Prioritization of SNPs for Functional Studies

by Fridley, Brooke L., Iversen, Ed, Tsai, Ya-Yu, Jenkins, Gregory D., Goode, Ellen L., Sellers, Thomas A.
Published 2011

Soft truncation thresholding for gene set analysis of RNA-seq data: Application to a vaccine study

by Fridley, Brooke L., Jenkins, Gregory D., Grill, Diane E., Kennedy, Richard B., Poland, Gregory A., Oberg, Ann L.
Published 2013

Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines

by Li, Liang, Fridley, Brooke L, Kalari, Krishna, Niu, Nifang, Jenkins, Gregory, Batzler, Anthony, Abo, Ryan P, Schaid, Daniel, Wang, Liewei
Published 2014

Robust gene expression and mutation analyses of RNA-sequencing of formalin-fixed diagnostic tumor samples

by Graw, Stefan, Meier, Richard, Minn, Kay, Bloomer, Clark, Godwin, Andrew K., Fridley, Brooke, Vlad, Anda, Beyerlein, Peter, Chien, Jeremy
Published 2015

Drug discovery using clinical outcome-based Connectivity Mapping: application to ovarian cancer

by Raghavan, Rama, Hyter, Stephen, Pathak, Harsh B., Godwin, Andrew K., Konecny, Gottfried, Wang, Chen, Goode, Ellen L., Fridley, Brooke L.
Published 2016

Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity

by Chauhan, Lata, Jenkins, Gregory D., Bhise, Neha, Feldberg, Tanya, Mitra-Ghosh, Taraswi, Fridley, Brooke L., Lamba, Jatinder K.
Published 2015

Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence

by Fridley, Brooke L., Ghosh, Taraswi M., Wang, Alice, Raghavan, Rama, Dai, Junqiang, Goode, Ellen L., Lamba, Jatinder K.
Published 2016

Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system

by Jiang, Jing, Fridley, Brooke L., Feng, Qiping, Abo, Ryan P., Brisbin, Abra, Batzler, Anthony, Jenkins, Gregory, Long, Pamela A., Wang, Liewei
Published 2013

Genetic variations associated with gemcitabine treatment outcome in pancreatic cancer

by Li, Liang, Zhang, Jian-Wei, Jenkins, Gregory, Xie, Fang, Carlson, Erin E., Fridley, Brooke L., Bamlet, William R., Petersen, Gloria M., McWilliams, Robert R., Wang, Liewei
Published 2016

Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes

by Way, Gregory P., Rudd, James, Wang, Chen, Hamidi, Habib, Fridley, Brooke L., Konecny, Gottfried E., Goode, Ellen L., Greene, Casey S., Doherty, Jennifer A.
Published 2016

Prior oral contraceptive use in ovarian cancer patients: assessing associations with overall and progression-free survival

by Jatoi, Aminah, Foster, Nathan R., Kalli, Kimberly R., Vierkant, Robert A., Zhang, Zhiying, Larson, Melissa C., Fridley, Brooke, Goode, Ellen L.
Published 2015

European American Stratification in Ovarian Cancer Case Control Data: The Utility of Genome-Wide Data for Inferring Ancestry

by Raska, Paola, Iversen, Edwin, Chen, Ann, Chen, Zhihua, Fridley, Brooke L., Permuth-Wey, Jennifer, Tsai, Ya-Yu, Vierkant, Robert A., Goode, Ellen L., Risch, Harvey, Schildkraut, Joellen M., Sellers, Thomas A., Barnholtz-Sloan, Jill
Published 2012

Regular Multivitamin Supplement Use, Single Nucleotide Polymorphisms in ATIC, SHMT2, and SLC46A1, and Risk of Ovarian Carcinoma

by Kelemen, Linda E., Wang, Qinggang, Dinu, Irina, Vierkant, Robert A., Tsai, Ya-Yu, Cunningham, Julie M., Phelan, Catherine M., Fridley, Brooke L., Amankwah, Ernest K., Iversen, Edwin S., Berchuck, Andrew, Schildkraut, Joellen M., Goode, Ellen L., Sellers, Thomas A.
Published 2012

Contribution of FKBP5 Genetic Variation to Gemcitabine Treatment and Survival in Pancreatic Adenocarcinoma

by Ellsworth, Katarzyna A., Eckloff, Bruce W., Li, Liang, Moon, Irene, Fridley, Brooke L., Jenkins, Gregory D., Carlson, Erin, Brisbin, Abra, Abo, Ryan, Bamlet, William, Petersen, Gloria, Wieben, Eric D., Wang, Liewei
Published 2013

Kernel canonical correlation analysis for assessing gene–gene interactions and application to ovarian cancer

by Larson, Nicholas B, Jenkins, Gregory D, Larson, Melissa C, Vierkant, Robert A, Sellers, Thomas A, Phelan, Catherine M, Schildkraut, Joellen M, Sutphen, Rebecca, Pharoah, Paul P D, Gayther, Simon A, Wentzensen, Nicolas, Goode, Ellen L, Fridley, Brooke L
Published 2014