Nucleic acid visualization with UCSF Chimera

by Couch, Gregory S., Hendrix, Donna K., Ferrin, Thomas E.
Published 2006

Comparison of methods for genomic localization of gene trap sequences

by Harper, Courtney A, Huang, Conrad C, Stryke, Doug, Kawamoto, Michiko, Ferrin, Thomas E, Babbitt, Patricia C
Published 2006

Tools for integrated sequence-structure analysis with UCSF Chimera

by Meng, Elaine C, Pettersen, Eric F, Couch, Gregory S, Huang, Conrad C, Ferrin, Thomas E
Published 2006

CyAnimator: Simple Animations of Cytoscape Networks

by Morris, John H., Vijay, Dhameliya, Federowicz, Steven, Pico, Alexander R., Ferrin, Thomas E.
Published 2015

enhancedGraphics: a Cytoscape app for enhanced node graphics

by Morris, John H., Kuchinsky, Allan, Ferrin, Thomas E., Pico, Alexander R.
Published 2014

Enhancing UCSF Chimera through web services

by Huang, Conrad C., Meng, Elaine C., Morris, John H., Pettersen, Eric F., Ferrin, Thomas E.
Published 2014

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

by Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Published 2011

DASP3: identification of protein sequences belonging to functionally relevant groups

by Leuthaeuser, Janelle B., Morris, John H., Harper, Angela F., Ferrin, Thomas E., Babbitt, Patricia C., Fetrow, Jacquelyn S.
Published 2016

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges

by Morris, John H., Lotia, Samad, Wu, Allan, Doncheva, Nadezhda T., Albrecht, Mario, Pico, Alexander R., Ferrin, Thomas E
Published 2015

Modeling Insertional Mutagenesis Using Gene Length and Expression in Murine Embryonic Stem Cells

by Nord, Alex S., Vranizan, Karen, Tingley, Whittemore, Zambon, Alexander C., Hanspers, Kristina, Fong, Loren G., Hu, Yan, Bacchetti, Peter, Ferrin, Thomas E., Babbitt, Patricia C., Doniger, Scott W., Skarnes, William C., Young, Stephen G., Conklin, Bruce R.
Published 2007

Genetic and Epigenetic Regulation of the Organic Cation Transporter 3, SLC22A3

by Chen, Ligong, Hong, Chibo, Chen, Eugene C., Yee, Sook Wah, Xu, Lu, Almof, Emil U., Wen, Christopher, Fujii, Kacyn, Johns, Susan J., Stryke, Doug, Ferrin, Thomas E., Simko, Jeff, Chen, Xin, Costello, Joseph F., Giacomini, Kathleen M.
Published 2012

The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse

by Nord, Alex S., Chang, Patricia J., Conklin, Bruce R., Cox, Antony V., Harper, Courtney A., Hicks, Geoffrey G., Huang, Conrad C., Johns, Susan J., Kawamoto, Michiko, Liu, Songyan, Meng, Elaine C., Morris, John H., Rossant, Janet, Ruiz, Patricia, Skarnes, William C., Soriano, Philippe, Stanford, William L., Stryke, Doug, von Melchner, Harald, Wurst, Wolfgang, Yamamura, Ken-ichi, Young, Stephen G., Babbitt, Patricia C., Ferrin, Thomas E.
Published 2006

The Structure–Function Linkage Database

by Akiva, Eyal, Brown, Shoshana, Almonacid, Daniel E., Barber, Alan E., Custer, Ashley F., Hicks, Michael A., Huang, Conrad C., Lauck, Florian, Mashiyama, Susan T., Meng, Elaine C., Mischel, David, Morris, John H., Ojha, Sunil, Schnoes, Alexandra M., Stryke, Doug, Yunes, Jeffrey M., Ferrin, Thomas E., Holliday, Gemma L., Babbitt, Patricia C.
Published 2014