CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks

by Baumbach, Jan
Published 2007

BiCluE - Exact and heuristic algorithms for weighted bi-cluster editing of biomedical data

by Sun, Peng, Guo, Jiong, Baumbach, Jan
Published 2013

CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands

by Pauling, Josch, Röttger, Richard, Tauch, Andreas, Azevedo, Vasco, Baumbach, Jan
Published 2012

Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing

by Wittkop, Tobias, Baumbach, Jan, Lobo, Francisco P, Rahmann, Sven
Published 2007

Carotta: Revealing Hidden Confounder Markers in Metabolic Breath Profiles

by Hauschild, Anne-Christin, Frisch, Tobias, Baumbach, Jörg Ingo, Baumbach, Jan
Published 2015

From Corynebacterium glutamicum to Mycobacterium tuberculosis—towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

by Krawczyk, Justina, Kohl, Thomas A., Goesmann, Alexander, Kalinowski, Jörn, Baumbach, Jan
Published 2009

CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks

by Baumbach, Jan, Brinkrolf, Karina, Czaja, Lisa F, Rahmann, Sven, Tauch, Andreas
Published 2006

Analysis of quality raw data of second generation sequencers with Quality Assessment Software

by Ramos, Rommel TJ, Carneiro, Adriana R, Baumbach, Jan, Azevedo, Vasco, Schneider, Maria PC, Silva, Artur
Published 2011

Live sequence charts to model medical information

by Aslakson, Eric, Szekely, Smadar, Vernon, Suzanne D, Bateman, Lucinda, Baumbach, Jan, Setty, Yaki
Published 2012

Peak Detection Method Evaluation for Ion Mobility Spectrometry by Using Machine Learning Approaches

by Hauschild, Anne-Christin, Kopczynski, Dominik, D’Addario, Marianna, Baumbach, Jörg Ingo, Rahmann, Sven, Baumbach, Jan
Published 2013

Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data—Reviewing the State of the Art

by Hauschild, Anne-Christin, Schneider, Till, Pauling, Josch, Rupp, Kathrin, Jang, Mi, Baumbach, Jörg Ingo, Baumbach, Jan
Published 2012

KeyPathwayMinerWeb: online multi-omics network enrichment

by List, Markus, Alcaraz, Nicolas, Dissing-Hansen, Martin, Ditzel, Henrik J., Mollenhauer, Jan, Baumbach, Jan
Published 2016

Comprehensive analysis of high-throughput screens with HiTSeekR

by List, Markus, Schmidt, Steffen, Christiansen, Helle, Rehmsmeier, Marc, Tan, Qihua, Mollenhauer, Jan, Baumbach, Jan
Published 2016

Massive fungal biodiversity data re-annotation with multi-level clustering

by Vu, Duong, Szöke, Szániszló, Wiwie, Christian, Baumbach, Jan, Cardinali, Gianluigi, Röttger, Richard, Robert, Vincent
Published 2014

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

by Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Published 2011

Efficient Sample Tracking With OpenLabFramework

by List, Markus, Schmidt, Steffen, Trojnar, Jakub, Thomas, Jochen, Thomassen, Mads, Kruse, Torben A., Tan, Qihua, Baumbach, Jan, Mollenhauer, Jan
Published 2014

Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and Infinium MethylationEPIC BeadChip data processing

by Almeida Diogo, Skov Ida, Lund Jesper, Mohammadnejad Afsaneh, Silva Artur, Vandin Fabio, Tan Qihua, Baumbach Jan, Röttger Richard
Published 2016-10-01

Robust de novo pathway enrichment with KeyPathwayMiner 5

by Alcaraz, Nicolas, List, Markus, Dissing-Hansen, Martin, Rehmsmeier, Marc, Tan, Qihua, Mollenhauer, Jan, Ditzel, Henrik J., Baumbach, Jan
Published 2016

KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape

by Alcaraz, Nicolas, Pauling, Josch, Batra, Richa, Barbosa, Eudes, Junge, Alexander, Christensen, Anne GL, Azevedo, Vasco, Ditzel, Henrik J, Baumbach, Jan
Published 2014

Microarray R-based analysis of complex lysate experiments with MIRACLE

by List, Markus, Block, Ines, Pedersen, Marlene Lemvig, Christiansen, Helle, Schmidt, Steffen, Thomassen, Mads, Tan, Qihua, Baumbach, Jan, Mollenhauer, Jan
Published 2014