Accurate detection of differential RNA processing

by Drewe, Philipp, Stegle, Oliver, Hartmann, Lisa, Kahles, André, Bohnert, Regina, Wachter, Andreas, Borgwardt, Karsten, Rätsch, Gunnar
Published 2013

MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples

by Behr, Jonas, Kahles, André, Zhong, Yi, Sreedharan, Vipin T., Drewe, Philipp, Rätsch, Gunnar
Published 2013

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints

by Zhong, Yi, Karaletsos, Theofanis, Drewe, Philipp, Sreedharan, Vipin T, Kuo, David, Singh, Kamini, Wendel, Hans-Guido, Rätsch, Gunnar
Published 2017

Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data

by Schultheiss, Sebastian J, Jean, Géraldine, Behr, Jonas, Bohnert, Regina, Drewe, Philipp, Görnitz, Nico, Kahles, André, Mudrakarta, Pramod, Sreedharan, Vipin T, Zeller, Georg, Rätsch, Gunnar
Published 2011

Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis

by Sreedharan, Vipin T., Schultheiss, Sebastian J., Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
Published 2014

Oqtans: a multifunctional workbench for RNA-seq data analysis

by Sreedharan, Vipin T, Schultheiss, Sebastian J, Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
Published 2014

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

by Dubin, Manu J, Zhang, Pei, Meng, Dazhe, Remigereau, Marie-Stanislas, Osborne, Edward J, Paolo Casale, Francesco, Drewe, Philipp, Kahles, André, Jean, Geraldine, Vilhjálmsson, Bjarni, Jagoda, Joanna, Irez, Selen, Voronin, Viktor, Song, Qiang, Long, Quan, Rätsch, Gunnar, Stegle, Oliver, Clark, Richard M, Nordborg, Magnus
Published 2015

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

by Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rátsch, Gunnar, Mott, Richard
Published 2011

RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer

by Wolfe, Andrew L., Singh, Kamini, Zhong, Yi, Drewe, Philipp, Rajasekhar, Vinagolu K., Sanghvi, Viraj R., Mavrakis, Konstantinos J., Jiang, Man, Roderick, Justine E., Van der Meulen, Joni, Schatz, Jonathan H., Rodrigo, Christina M., Zhao, Chunying, Rondou, Pieter, de Stanchina, Elisa, Teruya-Feldstein, Julie, Kelliher, Michelle A., Speleman, Frank, Porco, John A., Pelletier, Jerry, Rätsch, Gunnar, Wendel, Hans-Guido
Published 2014