How to infer gene networks from expression profiles

by Bansal, Mukesh, Belcastro, Vincenzo, Ambesi-Impiombato, Alberto, di Bernardo, Diego
Published 2007

How to infer gene networks from expression profiles

by Bansal, Mukesh, Belcastro, Vincenzo, Ambesi-Impiombato, Alberto, di Bernardo, Diego
Published 2007

Computational framework for the prediction of transcription factor binding sites by multiple data integration

by Ambesi-Impiombato, Alberto, Bansal, Mukesh, Liò, Pietro, di Bernardo, Diego
Published 2006

Drug-set enrichment analysis: a novel tool to investigate drug mode of action

by Napolitano, Francesco, Sirci, Francesco, Carrella, Diego, di Bernardo, Diego
Published 2016

Construction and Modelling of an Inducible Positive Feedback Loop Stably Integrated in a Mammalian Cell-Line

by Siciliano, Velia, Menolascina, Filippo, Marucci, Lucia, Fracassi, Chiara, Garzilli, Immacolata, Moretti, Maria Nicoletta, di Bernardo, Diego
Published 2011

Differential network analysis for the identification of condition-specific pathway activity and regulation

by Gambardella, Gennaro, Moretti, Maria Nicoletta, de Cegli, Rossella, Cardone, Luca, Peron, Adriano, di Bernardo, Diego
Published 2013

miRNAs confer phenotypic robustness to gene networks by suppressing biological noise

by Siciliano, Velia, Garzilli, Immacolata, Fracassi, Chiara, Criscuolo, Stefania, Ventre, Simona, di Bernardo, Diego
Published 2013

Colocalization of Coregulated Genes: A Steered Molecular Dynamics Study of Human Chromosome 19

by Di Stefano, Marco, Rosa, Angelo, Belcastro, Vincenzo, di Bernardo, Diego, Micheletti, Cristian
Published 2013

A reverse-engineering approach to dissect post-translational modulators of transcription factor’s activity from transcriptional data

by Gambardella, Gennaro, Peluso, Ivana, Montefusco, Sandro, Bansal, Mukesh, Medina, Diego L., Lawrence, Neil, di Bernardo, Diego
Published 2015

A network-based approach to dissect the cilia/centrosome complex interactome

by Amato, Roberto, Morleo, Manuela, Giaquinto, Laura, di Bernardo, Diego, Franco, Brunella
Published 2014

A community-based resource for automatic exome variant-calling and annotation in Mendelian disorders

by Mutarelli, Margherita, Marwah, Veer Singh, Rispoli, Rossella, Carrella, Diego, Dharmalingam, Gopuraja, Oliva, Gennaro, di Bernardo, Diego
Published 2014

In-Vivo Real-Time Control of Protein Expression from Endogenous and Synthetic Gene Networks

by Menolascina, Filippo, Fiore, Gianfranco, Orabona, Emanuele, De Stefano, Luca, Ferry, Mike, Hasty, Jeff, di Bernardo, Mario, di Bernardo, Diego
Published 2014

Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function

by Belcastro, Vincenzo, Siciliano, Velia, Gregoretti, Francesco, Mithbaokar, Pratibha, Dharmalingam, Gopuraja, Berlingieri, Stefania, Iorio, Francesco, Oliva, Gennaro, Polishchuck, Roman, Brunetti-Pierri, Nicola, di Bernardo, Diego
Published 2011

DG-CST (Disease Gene Conserved Sequence Tags), a database of human–mouse conserved elements associated to disease genes

by Boccia, Angelo, Petrillo, Mauro, di Bernardo, Diego, Guffanti, Alessandro, Mignone, Flavio, Confalonieri, Stefano, Luzi, Lucilla, Pesole, Graziano, Paolella, Giovanni, Ballabio, Andrea, Banfi, Sandro
Published 2005

Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation

by De Cegli, Rossella, Iacobacci, Simona, Flore, Gemma, Gambardella, Gennaro, Mao, Lei, Cutillo, Luisa, Lauria, Mario, Klose, Joachim, Illingworth, Elizabeth, Banfi, Sandro, di Bernardo, Diego
Published 2013

In Silico Modeling of Liver Metabolism in a Human Disease Reveals a Key Enzyme for Histidine and Histamine Homeostasis

by Pagliarini, Roberto, Castello, Raffaele, Napolitano, Francesco, Borzone, Roberta, Annunziata, Patrizia, Mandrile, Giorgia, De Marchi, Mario, Brunetti-Pierri, Nicola, di Bernardo, Diego
Published 2016

Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis

by Racioppi, Claudia, Kamal, Ashwani K., Razy-Krajka, Florian, Gambardella, Gennaro, Zanetti, Laura, di Bernardo, Diego, Sanges, Remo, Christiaen, Lionel A., Ristoratore, Filomena
Published 2014

Goblet Cell Hyperplasia Requires High Bicarbonate Transport To Support Mucin Release

by Gorrieri, Giulia, Scudieri, Paolo, Caci, Emanuela, Schiavon, Marco, Tomati, Valeria, Sirci, Francesco, Napolitano, Francesco, Carrella, Diego, Gianotti, Ambra, Musante, Ilaria, Favia, Maria, Casavola, Valeria, Guerra, Lorenzo, Rea, Federico, Ravazzolo, Roberto, Di Bernardo, Diego, Galietta, Luis J. V.
Published 2016

Deficiency of multidrug resistance 2 contributes to cell transformation through oxidative stress

by Tebbi, Ali, Levillayer, Florence, Jouvion, Grégory, Fiette, Laurence, Soubigou, Guillaume, Varet, Hugo, Boudjadja, Nesrine, Cairo, Stefano, Hashimoto, Kosuke, Suzuki, Ana Maria, Carninci, Piero, Carissimo, Annamaria, di Bernardo, Diego, Wei, Yu
Published 2016

High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs

by Karali, Marianthi, Persico, Maria, Mutarelli, Margherita, Carissimo, Annamaria, Pizzo, Mariateresa, Singh Marwah, Veer, Ambrosio, Concetta, Pinelli, Michele, Carrella, Diego, Ferrari, Stefano, Ponzin, Diego, Nigro, Vincenzo, di Bernardo, Diego, Banfi, Sandro
Published 2016