FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies

by Redfern, Oliver C., Dessailly, Benoît H., Dallman, Timothy J., Sillitoe, Ian, Orengo, Christine A.
Published 2009

Draft genome sequences of the type strains of Shigella flexneri held at Public Health England: comparison of classical phenotypic and novel molecular assays with whole genome seque...

by Ashton, Philip M, Baker, Kate S, Gentle, Amy, Wooldridge, David J, Thomson, Nicholas R, Dallman, Timothy J, Jenkins, Claire
Published 2014

Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance

by Holmes, Anne, Allison, Lesley, Ward, Melissa, Dallman, Timothy J., Clark, Richard, Fawkes, Angie, Murphy, Lee, Hanson, Mary
Published 2015

Evaluating the Use of Multilocus Variable Number Tandem Repeat Analysis of Shiga Toxin-Producing Escherichia coli O157 as a Routine Public Health Tool in England

by Byrne, Lisa, Elson, Richard, Dallman, Timothy J., Perry, Neil, Ashton, Philip, Wain, John, Adak, Goutam K., Grant, Kathie A., Jenkins, Claire
Published 2014

Whole Genome Sequencing for Public Health Surveillance of Shiga Toxin-Producing Escherichia coli Other than Serogroup O157

by Chattaway, Marie A., Dallman, Timothy J., Gentle, Amy, Wright, Michael J., Long, Sophie E., Ashton, Philip M., Perry, Neil T., Jenkins, Claire
Published 2016

An Investigation of the Diversity of Strains of Enteroaggregative Escherichia coli Isolated from Cases Associated with a Large Multi-Pathogen Foodborne Outbreak in the UK

by Dallman, Timothy J., Chattaway, Marie A., Cowley, Lauren A., Doumith, Michel, Tewolde, Rediat, Wooldridge, David J., Underwood, Anthony, Ready, Derren, Wain, John, Foster, Kirsty, Grant, Kathie A., Jenkins, Claire
Published 2014

Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities

by Baker, Kate S., Dallman, Timothy J., Behar, Adi, Weill, François-Xavier, Gouali, Malika, Sobel, Jeremy, Fookes, Maria, Valinsky, Lea, Gal-Mor, Ohad, Connor, Thomas R., Nissan, Israel, Bertrand, Sophie, Parkhill, Julian, Jenkins, Claire, Cohen, Dani, Thomson, Nicholas R.
Published 2016

Identification of Salmonella for public health surveillance using whole genome sequencing

by Ashton, Philip M., Nair, Satheesh, Peters, Tansy M., Bale, Janet A., Powell, David G., Painset, Anaïs, Tewolde, Rediat, Schaefer, Ulf, Jenkins, Claire, Dallman, Timothy J., de Pinna, Elizabeth M., Grant, Kathie A.
Published 2016

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

by Quick, Joshua, Ashton, Philip, Calus, Szymon, Chatt, Carole, Gossain, Savita, Hawker, Jeremy, Nair, Satheesh, Neal, Keith, Nye, Kathy, Peters, Tansy, De Pinna, Elizabeth, Robinson, Esther, Struthers, Keith, Webber, Mark, Catto, Andrew, Dallman, Timothy J., Hawkey, Peter, Loman, Nicholas J.
Published 2015

What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B

by Connor, Thomas R., Owen, Sian V., Langridge, Gemma, Connell, Steve, Nair, Satheesh, Reuter, Sandra, Dallman, Timothy J., Corander, Jukka, Tabing, Kristine C., Le Hello, Simon, Fookes, Maria, Doublet, Benoît, Zhou, Zhemin, Feltwell, Theresa, Ellington, Matthew J., Herrera, Silvia, Gilmour, Matthew, Cloeckaert, Axel, Achtman, Mark, Parkhill, Julian, Wain, John, De Pinna, Elizabeth, Weill, François-Xavier, Peters, Tansy, Thomson, Nick
Published 2016

Phylogenomic approaches to determine the zoonotic potential of Shiga toxin-producing Escherichia coli (STEC) isolated from Zambian dairy cattle

by Mainda, Geoffrey, Lupolova, Nadejda, Sikakwa, Linda, Bessell, Paul R., Muma, John B., Hoyle, Deborah V., McAteer, Sean P., Gibbs, Kirsty, Williams, Nicola J., Sheppard, Samuel K., La Ragione, Roberto M., Cordoni, Guido, Argyle, Sally A., Wagner, Sam, Chase-Topping, Margo E., Dallman, Timothy J., Stevens, Mark P., Bronsvoort, Barend M. deC., Gally, David L.
Published 2016

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

by Feasey, Nicholas A., Hadfield, James, Keddy, Karen H., Dallman, Timothy J, Jacobs, Jan, Deng, Xiangyu, Wigley, Paul, Barquist, Lars, Langridge, Gemma C., Feltwell, Theresa, Harris, Simon R., Mather, Alison E., Fookes, Maria, Aslett, Martin, Msefula, Chisomo, Kariuki, Samuel, Maclennan, Calman A., Onsare, Robert S., Weill, François-Xavier, Le Hello, Simon, Smith, Anthony M., McClelland, Michael, Desai, Prerak, Parry, Christopher M., Cheesbrough, John, French, Neil, Campos, Josefina, Chabalgoity, Jose A., Betancor, Laura, Hopkins, Katie L., Nair, Satheesh, Humphrey, Tom J., Lunguya, Octavie, Cogan, Tristan A., Tapia, Milagritos D., Sow, Samba O., Tennant, Sharon M., Bornstein, Kristin, Levine, Myron M., Lacharme-Lora, Lizeth, Everett, Dean B., Kingsley, Robert A., Parkhill, Julian, Heyderman, Robert S., Dougan, Gordon, Gordon, Melita A, Thomson, Nicholas R.
Published 2016