Genome surveyor 2.0: cis-regulatory analysis in Drosophila

by Kazemian, Majid, Brodsky, Michael H., Sinha, Saurabh
Published 2011

Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison

by Kazemian, Majid, Zhu, Qiyun, Halfon, Marc S., Sinha, Saurabh
Published 2011

Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism

by Blatti, Charles, Kazemian, Majid, Wolfe, Scot, Brodsky, Michael, Sinha, Saurabh
Published 2015

Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development

by Kazemian, Majid, Pham, Hannah, Wolfe, Scot A., Brodsky, Michael H., Sinha, Saurabh
Published 2013

Prediction of Breeding Values for Dairy Cattle Using Artificial Neural Networks and Neuro-Fuzzy Systems

by Shahinfar, Saleh, Mehrabani-Yeganeh, Hassan, Lucas, Caro, Kalhor, Ahmad, Kazemian, Majid, Weigel, Kent A.
Published 2012

Simulations of Enhancer Evolution Provide Mechanistic Insights into Gene Regulation

by Duque, Thyago, Samee, Md. Abul Hassan, Kazemian, Majid, Pham, Hannah N., Brodsky, Michael H., Sinha, Saurabh
Published 2014

Comprehensive assembly of novel transcripts from unmapped human RNA-Seq data and their association with cancer

by Kazemian, Majid, Ren, Min, Lin, Jian-Xin, Liao, Wei, Spolski, Rosanne, Leonard, Warren J
Published 2015

Computational Identification of Diverse Mechanisms Underlying Transcription Factor-DNA Occupancy

by Cheng, Qiong, Kazemian, Majid, Pham, Hannah, Blatti, Charles, Celniker, Susan E., Wolfe, Scot A., Brodsky, Michael H., Sinha, Saurabh
Published 2013

Evidence for Deep Regulatory Similarities in Early Developmental Programs across Highly Diverged Insects

by Kazemian, Majid, Suryamohan, Kushal, Chen, Jia-Yu, Zhang, Yinan, Samee, Md. Abul Hassan, Halfon, Marc S., Sinha, Saurabh
Published 2014

Correction: Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials

by Kazemian, Majid, Blatti, Charles, Richards, Adam, McCutchan, Michael, Wakabayashi-Ito, Noriko, Hammonds, Ann S., Celniker, Susan E., Kumar, Sudhir, Wolfe, Scot A., Brodsky, Michael H., Sinha, Saurabh
Published 2013