The Western English Channel contains a persistent microbial seed bank

by Caporaso, J Gregory, Paszkiewicz, Konrad, Field, Dawn, Knight, Rob, Gilbert, Jack A
Published 2012

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

by Walters, William A., Caporaso, J. Gregory, Lauber, Christian L., Berg-Lyons, Donna, Fierer, Noah, Knight, Rob
Published 2011

TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata

by Pirrung, Meg, Kennedy, Ryan, Caporaso, J. Gregory, Stombaugh, Jesse, Wendel, Doug, Knight, Rob
Published 2011

The Ecology of Microbial Communities Associated with Macrocystis pyrifera

by Michelou, Vanessa K., Caporaso, J. Gregory, Knight, Rob, Palumbi, Stephen R.
Published 2013

Correction: The Ecology of Microbial Communities Associated with Macrocystis pyrifera

by Michelou, Vanessa K., Caporaso, J. Gregory, Knight, Rob, Palumbi, Stephen R.
Published 2013

From molecules to dynamic biological communities

by McDonald, Daniel, Vázquez-Baeza, Yoshiki, Walters, William A., Caporaso, J. Gregory, Knight, Rob
Published 2013

The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

by Sahl, Jason W., Caporaso, J. Gregory, Rasko, David A., Keim, Paul
Published 2014

cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies

by Chase, John H., Bolyen, Evan, Rideout, Jai Ram, Caporaso, J. Gregory
Published 2015

Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs)

by Hewitt, Krissi M., Mannino, Frank L., Gonzalez, Antonio, Chase, John H., Caporaso, J. Gregory, Knight, Rob, Kelley, Scott T.
Published 2013

Geography and Location Are the Primary Drivers of Office Microbiome Composition

by Chase, John, Fouquier, Jennifer, Zare, Mahnaz, Sonderegger, Derek L., Knight, Rob, Kelley, Scott T., Siegel, Jeffrey, Caporaso, J. Gregory
Published 2016

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets

by Rideout, Jai Ram, Chase, John H., Bolyen, Evan, Ackermann, Gail, González, Antonio, Knight, Rob, Caporaso, J. Gregory
Published 2016

Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing

by Taylor, D. Lee, Walters, William A., Lennon, Niall J., Bochicchio, James, Krohn, Andrew, Caporaso, J. Gregory, Pennanen, Taina
Published 2016

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

by Shade, Ashley, Jones, Stuart E., Caporaso, J. Gregory, Handelsman, Jo, Knight, Rob, Fierer, Noah, Gilbert, Jack A.
Published 2014

Collaborative cloud-enabled tools allow rapid, reproducible biological insights

by Ragan-Kelley, Benjamin, Walters, William Anton, McDonald, Daniel, Riley, Justin, Granger, Brian E, Gonzalez, Antonio, Knight, Rob, Perez, Fernando, Caporaso, J Gregory
Published 2013

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

by McDonald, Daniel, Clemente, Jose C, Kuczynski, Justin, Rideout, Jai Ram, Stombaugh, Jesse, Wendel, Doug, Wilke, Andreas, Huse, Susan, Hufnagle, John, Meyer, Folker, Knight, Rob, Caporaso, J Gregory
Published 2012

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

by Bokulich, Nicholas A., Subramanian, Sathish, Faith, Jeremiah J., Gevers, Dirk, Gordon, Jeffrey I., Knight, Rob, Mills, David A., Caporaso, J. Gregory
Published 2012

The Personal Human Oral Microbiome Obscures the Effects of Treatment on Periodontal Disease

by Schwarzberg, Karen, Le, Rosalin, Bharti, Balambal, Lindsay, Suzanne, Casaburi, Giorgio, Salvatore, Francesco, Saber, Mohamed H., Alonaizan, Faisal, Slots, Jørgen, Gottlieb, Roberta A., Caporaso, J. Gregory, Kelley, Scott T.
Published 2014

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking

by Bokulich, Nicholas A., Rideout, Jai Ram, Mercurio, William G., Shiffer, Arron, Wolfe, Benjamin, Maurice, Corinne F., Dutton, Rachel J., Turnbaugh, Peter J., Knight, Rob, Caporaso, J. Gregory
Published 2016

Open-Source Sequence Clustering Methods Improve the State Of the Art

by Kopylova, Evguenia, Navas-Molina, Jose A., Mercier, Céline, Xu, Zhenjiang Zech, Mahé, Frédéric, He, Yan, Zhou, Hong-Wei, Rognes, Torbjørn, Caporaso, J. Gregory, Knight, Rob
Published 2016

Reduced Epithelial Na+/H+ Exchange Drives Gut Microbial Dysbiosis and Promotes Inflammatory Response in T Cell-Mediated Murine Colitis

by Laubitz, Daniel, Harrison, Christy A., Midura-Kiela, Monica T., Ramalingam, Rajalakshmy, Larmonier, Claire B., Chase, John H., Caporaso, J. Gregory, Besselsen, David G., Ghishan, Fayez K., Kiela, Pawel R.
Published 2016