Development of a high throughput assay for indirectly measuring phage growth using the OmniLogTM system

by Henry, Matthew, Biswas, Biswajit, Vincent, Leah, Mokashi, Vishwesh, Schuch, Raymond, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga
Published 2012

BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results

by Herrera-Galeano, Jesus Enrique, Frey, Kenneth G, Cer, Regina Z, Mateczun, Alfred J, Bishop-Lilly, Kimberly A, Mokashi, Vishwesh P
Published 2014

Bioinformatic Characterization of Mosquito Viromes within the Eastern United States and Puerto Rico: Discovery of Novel Viruses

by Frey, Kenneth G., Biser, Tara, Hamilton, Theron, Santos, Carlos J., Pimentel, Guillermo, Mokashi, Vishwesh P., Bishop-Lilly, Kimberly A.
Published 2016

miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation

by Cer, Regina Z, Herrera-Galeano, J Enrique, Anderson, Joseph J, Bishop-Lilly, Kimberly A, Mokashi, Vishwesh P
Published 2014

PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data

by Chang, Wenling E, Sarver, Keri, Higgs, Brandon W, Read, Timothy D, Nolan, Nichole ME, Chapman, Carol E, Bishop-Lilly, Kimberly A, Sozhamannan, Shanmuga
Published 2011

Genome Sequencing of Four Strains of Rickettsia prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate

by Bishop-Lilly, Kimberly A., Ge, Hong, Butani, Amy, Osborne, Brian, Verratti, Kathleen, Mokashi, Vishwesh, Nagarajan, Niranjan, Pop, Mihai, Read, Timothy D., Richards, Allen L.
Published 2013

A Yersinia pestis-specific, lytic phage preparation significantly reduces viable Y. pestis on various hard surfaces experimentally contaminated with the bacterium

by Rashid, Mohammed H., Revazishvili, Tamara, Dean, Timothy, Butani, Amy, Verratti, Kathleen, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga, Sulakvelidze, Alexander, Rajanna, Chythanya
Published 2012

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood

by Frey, Kenneth G, Herrera-Galeano, Jesus Enrique, Redden, Cassie L, Luu, Truong V, Servetas, Stephanie L, Mateczun, Alfred J, Mokashi, Vishwesh P, Bishop-Lilly, Kimberly A
Published 2014

Full-Genome Sequence of Human Betacoronavirus 2c Jordan-N3/2012 after Serial Passage in Mammalian Cells

by Frey, Kenneth G., Redden, Cassie L., Bishop-Lilly, Kimberly A., Johnson, Reed, Hensley, Lisa E., Raviprakash, Kanakatte, Luke, Thomas, Kochel, Tad, Mokashi, Vishwesh P., Defang, Gabriel N.
Published 2014

Genome Sequencing of 15 Clinical Vibrio Isolates, Including 13 Non-O1/Non-O139 Serogroup Strains

by Bishop-Lilly, Kimberly A., Johnson, Shannon L., Verratti, Kathleen, Luu, Truong, Khiani, Amy, Awosika, Joy, Mokashi, Vishwesh P., Chain, Patrick S. G., Sozhamannan, Shanmuga
Published 2014

Whole genome sequencing of phage resistant Bacillus anthracis mutants reveals an essential role for cell surface anchoring protein CsaB in phage AP50c adsorption

by Bishop-Lilly, Kimberly A, Plaut, Roger D, Chen, Peter E, Akmal, Arya, Willner, Kristin M, Butani, Amy, Dorsey, Shakia, Mokashi, Vishwesh, Mateczun, Alfred J, Chapman, Carol, George, Matroner, Luu, Truong, Read, Timothy D, Calendar, Richard, Stibitz, Scott, Sozhamannan, Shanmuga
Published 2012

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity

by Fouts, Derrick E, Klumpp, Jochen, Bishop-Lilly, Kimberly A, Rajavel, Mathumathi, Willner, Kristin M, Butani, Amy, Henry, Matthew, Biswas, Biswajit, Li, Manrong, Albert, M John, Loessner, Martin J, Calendar, Richard, Sozhamannan, Shanmuga
Published 2013

Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity

by Chapman, Carol, Henry, Matthew, Bishop-Lilly, Kimberly A., Awosika, Joy, Briska, Adam, Ptashkin, Ryan N., Wagner, Trevor, Rajanna, Chythanya, Tsang, Hsinyi, Johnson, Shannon L., Mokashi, Vishwesh P., Chain, Patrick S. G., Sozhamannan, Shanmuga
Published 2015

Crystal Structure of the Hendra Virus Attachment G Glycoprotein Bound to a Potent Cross-Reactive Neutralizing Human Monoclonal Antibody

by Xu, Kai, Rockx, Barry, Xie, Yihu, DeBuysscher, Blair L., Fusco, Deborah L., Zhu, Zhongyu, Chan, Yee-Peng, Xu, Yan, Luu, Truong, Cer, Regina Z., Feldmann, Heinz, Mokashi, Vishwesh, Dimitrov, Dimiter S., Bishop-Lilly, Kimberly A., Broder, Christopher C., Nikolov, Dimitar B.
Published 2013

Bacterial Etiology and Risk Factors Associated with Cellulitis and Purulent Skin Abscesses in Military Trainees

by Johnson, Ryan C., Ellis, Michael W., Schlett, Carey D., Millar, Eugene V., LaBreck, Patrick T., Mor, Deepika, Elassal, Emad M., Lanier, Jeffrey B., Redden, Cassie L., Cui, Tianyuan, Teneza-Mora, Nimfa, Bishop, Danett K., Hall, Eric R., Bishop-Lilly, Kimberly A., Merrell, D. Scott
Published 2016

Genome Sequencing of 18 Francisella Strains To Aid in Assay Development and Testing

by Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Coyne, Susan R., Frey, Kenneth G., Koroleva, Galina I., Broomall, Stacey M., Bishop-Lilly, Kimberly A., Bruce, David C., Chertkov, Olga, Freitas, Tracey, Jaissle, James, Ladner, Jason T., Rosenzweig, C. Nicole, Gibbons, Henry S., Palacios, Gustavo F., Redden, Cassie L., Xu, Yan, Minogue, Timothy D., Chain, Patrick S.
Published 2015

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica

by Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Ladner, Jason T., Broomall, Stacey M., Bishop-Lilly, Kimberly A., Bruce, David C., Coyne, Susan R., Gibbons, Henry S., Lo, Chien-Chi, Munk, A. Christine, Rosenzweig, C. Nicole, Koroleva, Galina I., Palacios, Gustavo F., Redden, Cassie L., Xu, Yan, Minogue, Timothy D., Chain, Patrick S.
Published 2015

Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species

by Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Ladner, Jason T., Broomall, Stacey M., Bishop-Lilly, Kimberly A., Bruce, David C., Gibbons, Henry S., Coyne, Susan R., Lo, Chien-Chi, Meincke, Linda, Munk, A. Christine, Koroleva, Galina I., Rosenzweig, C. Nicole, Palacios, Gustavo F., Redden, Cassie L., Minogue, Timothy D., Chain, Patrick S.
Published 2015

Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

by Johnson, Shannon L., Bishop-Lilly, Kimberly A., Ladner, Jason T., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Koroleva, Galina I., Bruce, David C., Coyne, Susan R., Broomall, Stacey M., Li, Po-E, Teshima, Hazuki, Gibbons, Henry S., Palacios, Gustavo F., Rosenzweig, C. Nicole, Redden, Cassie L., Xu, Yan, Minogue, Timothy D., Chain, Patrick S.
Published 2015

Genomic Signatures of Strain Selection and Enhancement in Bacillus atrophaeus var. globigii, a Historical Biowarfare Simulant

by Gibbons, Henry S., Broomall, Stacey M., McNew, Lauren A., Daligault, Hajnalka, Chapman, Carol, Bruce, David, Karavis, Mark, Krepps, Michael, McGregor, Paul A., Hong, Charles, Park, Kyong H., Akmal, Arya, Feldman, Andrew, Lin, Jeffrey S., Chang, Wenling E., Higgs, Brandon W., Demirev, Plamen, Lindquist, John, Liem, Alvin, Fochler, Ed, Read, Timothy D., Tapia, Roxanne, Johnson, Shannon, Bishop-Lilly, Kimberly A., Detter, Chris, Han, Cliff, Sozhamannan, Shanmuga, Rosenzweig, C. Nicole, Skowronski, Evan W.
Published 2011