Patterns of Intron Gain and Loss in Fungi

by Nielsen, Cydney B, Friedman, Brad, Birren, Bruce, Burge, Christopher B, Galagan, James E
Published 2004

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

by Haas, Brian J, Chin, Melissa, Nusbaum, Chad, Birren, Bruce W, Livny, Jonathan
Published 2012

Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum

by Cuomo, Christina A., Untereiner, Wendy A., Ma, Li-Jun, Grabherr, Manfred, Birren, Bruce W.
Published 2015

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

by Rodrigue, Sébastien, Malmstrom, Rex R., Berlin, Aaron M., Birren, Bruce W., Henn, Matthew R., Chisholm, Sallie W.
Published 2009

Endurance, Refuge, and Reemergence of Dengue Virus Type 2, Puerto Rico, 1986–2007

by McElroy, Kate L., Santiago, Gilberto A., Lennon, Niall J., Birren, Bruce W., Henn, Matthew R., Muñoz-Jordán, Jorge L.
Published 2011

16S rRNA Gene Survey of Microbial Communities in Winogradsky Columns

by Rundell, Ethan A., Banta, Lois M., Ward, Doyle V., Watts, Corey D., Birren, Bruce, Esteban, David J.
Published 2014

The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome

by Gevers, Dirk, Knight, Rob, Petrosino, Joseph F., Huang, Katherine, McGuire, Amy L., Birren, Bruce W., Nelson, Karen E., White, Owen, Methé, Barbara A., Huttenhower, Curtis
Published 2012

Correction: The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations

by Pepperell, Caitlin S., Casto, Amanda M., Kitchen, Andrew, Granka, Julie M., Cornejo, Omar E., Holmes, Edward C., Birren, Bruce, Galagan, James, Feldman, Marcus W.
Published 2013

The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations

by Pepperell, Caitlin S., Casto, Amanda M., Kitchen, Andrew, Granka, Julie M., Cornejo, Omar E., Holmes, Eddie C., Birren, Bruce, Galagan, James, Feldman, Marcus W.
Published 2013

Genome Sequence of the Pathogenic Fungus Sporothrix schenckii (ATCC 58251)

by Cuomo, Christina A., Rodriguez-Del Valle, Nuri, Perez-Sanchez, Lizaida, Abouelleil, Amr, Goldberg, Jonathan, Young, Sarah, Zeng, Qiandong, Birren, Bruce W.
Published 2014

Draft Genome Sequences of Two Extensively Drug-Resistant Strains of Mycobacterium tuberculosis Belonging to the Euro-American S Lineage

by Malinga, Lesibana A., Abeel, Thomas, Desjardins, Christopher A., Dlamini, Talent C., Cassell, Gail, Chapman, Sinéad B., Birren, Bruce W., Earl, Ashlee M., van der Walt, Martie
Published 2016

Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, to avirulent Burkholderia thailandensis

by Yu, Yiting, Kim, H Stanley, Chua, Hui Hoon, Lin, Chi Ho, Sim, Siew Hoon, Lin, Daoxun, Derr, Alan, Engels, Reinhard, DeShazer, David, Birren, Bruce, Nierman, William C, Tan, Patrick
Published 2006

Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus

by Palmer, Kelli L., Godfrey, Paul, Griggs, Allison, Kos, Veronica N., Zucker, Jeremy, Desjardins, Christopher, Cerqueira, Gustavo, Gevers, Dirk, Walker, Suzanne, Wortman, Jennifer, Feldgarden, Michael, Haas, Brian, Birren, Bruce, Gilmore, Michael S.
Published 2012

High quality draft genome sequence of Segniliparus rugosus CDC 945T= (ATCC BAA-974T)

by Earl, Ashlee M., Desjardins, Christopher A., Fitzgerald, Michael G., Arachchi, Harindra M., Zeng, Qiandong, Mehta, Teena, Griggs, Allison, Birren, Bruce W., Toney, Nadege C., Carr, Janice, Posey, James, Butler, W. Ray
Published 2011

Endemic Dengue Associated with the Co-Circulation of Multiple Viral Lineages and Localized Density-Dependent Transmission

by Raghwani, Jayna, Rambaut, Andrew, Holmes, Edward C., Hang, Vu Ty, Hien, Tran Tinh, Farrar, Jeremy, Wills, Bridget, Lennon, Niall J., Birren, Bruce W., Henn, Matthew R., Simmons, Cameron P.
Published 2011

The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing

by Fodor, Anthony A., DeSantis, Todd Z., Wylie, Kristine M., Badger, Jonathan H., Ye, Yuzhen, Hepburn, Theresa, Hu, Ping, Sodergren, Erica, Liolios, Konstantinos, Huot-Creasy, Heather, Birren, Bruce W., Earl, Ashlee M.
Published 2012

Evolutionary Dynamics of the Accessory Genome of Listeria monocytogenes

by den Bakker, Henk C., Desjardins, Christopher A., Griggs, Allison D., Peters, Joseph E., Zeng, Qiandong, Young, Sarah K., Kodira, Chinnappa D., Yandava, Chandri, Hepburn, Theresa A., Haas, Brian J., Birren, Bruce W., Wiedmann, Martin
Published 2013

Emergence of Epidemic Multidrug-Resistant Enterococcus faecium from Animal and Commensal Strains

by Lebreton, François, van Schaik, Willem, Manson McGuire, Abigail, Godfrey, Paul, Griggs, Allison, Mazumdar, Varun, Corander, Jukka, Cheng, Lu, Saif, Sakina, Young, Sarah, Zeng, Qiandong, Wortman, Jennifer, Birren, Bruce, Willems, Rob J. L., Earl, Ashlee M., Gilmore, Michael S.
Published 2013

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

by Giannoukos, Georgia, Ciulla, Dawn M, Huang, Katherine, Haas, Brian J, Izard, Jacques, Levin, Joshua Z, Livny, Jonathan, Earl, Ashlee M, Gevers, Dirk, Ward, Doyle V, Nusbaum, Chad, Birren, Bruce W, Gnirke, Andreas
Published 2012

Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

by Yassour, Moran, Lim, Mi Young, Yun, Hyun Sun, Tickle, Timothy L., Sung, Joohon, Song, Yun-Mi, Lee, Kayoung, Franzosa, Eric A., Morgan, Xochitl C., Gevers, Dirk, Lander, Eric S., Xavier, Ramnik J., Birren, Bruce W., Ko, GwangPyo, Huttenhower, Curtis
Published 2016