Integrating scientific cultures

by Ideker, Trey, Bafna, Vineet, Lemberger, Thomas
Published 2007

Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance

by Bashir, Ali, Bansal, Vikas, Bafna, Vineet
Published 2010

The elusive evidence for chromothripsis

by Kinsella, Marcus, Patel, Anand, Bafna, Vineet
Published 2014

Tests of Selection in Pooled Case-Control Data: An Empirical Study

by Udpa, Nitin, Zhou, Dan, Haddad, Gabriel G., Bafna, Vineet
Published 2011

Reprever: resolving low-copy duplicated sequences using template driven assembly

by Kim, Sangwoo, Medvedev, Paul, Paton, Tara A., Bafna, Vineet
Published 2013

Evaluating genome architecture of a complex region via generalized bipartite matching

by Lo, Christine, Kim, Sangwoo, Zakov, Shay, Bafna, Vineet
Published 2013

Inferring gene ontologies from pairwise similarity data

by Kramer, Michael, Dutkowski, Janusz, Yu, Michael, Bafna, Vineet, Ideker, Trey
Published 2014

InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms

by Patel, Anand, Edge, Peter, Selvaraj, Siddarth, Bansal, Vikas, Bafna, Vineet
Published 2016

Sample Reproducibility of Genetic Association Using Different Multimarker TDTs in Genome-Wide Association Studies: Characterization and a New Approach

by Abad-Grau, Mara M., Medina-Medina, Nuria, Montes-Soldado, Rosana, Matesanz, Fuencisla, Bafna, Vineet
Published 2012

Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele

by Ronen, Roy, Tesler, Glenn, Akbari, Ali, Zakov, Shay, Rosenberg, Noah A., Bafna, Vineet
Published 2016

Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele

by Ronen, Roy, Tesler, Glenn, Akbari, Ali, Zakov, Shay, Rosenberg, Noah A., Bafna, Vineet
Published 2015

On the design of clone-based haplotyping

by Lo, Christine, Liu, Rui, Lee, Jehyuk, Robasky, Kimberly, Byrne, Susan, Lucchesi, Carolina, Aach, John, Church, George, Bafna, Vineet, Zhang, Kun
Published 2013

Virmid: accurate detection of somatic mutations with sample impurity inference

by Kim, Sangwoo, Jeong, Kyowon, Bhutani, Kunal, Lee, Jeong Ho, Patel, Anand, Scott, Eric, Nam, Hojung, Lee, Hayan, Gleeson, Joseph G, Bafna, Vineet
Published 2013

Senp1 drives hypoxia-induced polycythemia via GATA1 and Bcl-xL in subjects with Monge’s disease

by Azad, Priti, Zhao, Huiwen W., Cabrales, Pedro J., Ronen, Roy, Zhou, Dan, Poulsen, Orit, Appenzeller, Otto, Hsiao, Yu Hsin, Bafna, Vineet, Haddad, Gabriel G.
Published 2016

The TGFβ1 Promoter SNP C-509T and Food Sensitization Promote Esophageal Remodeling in Pediatric Eosinophilic Esophagitis

by Rawson, Renee, Anilkumar, Arjun, Newbury, Robert O., Bafna, Vineet, Aquino, Melissa, Palmquist, Jacob, Hoffman, Hal M., Mueller, James L., Dohil, Ranjan, . Broide, David H, Aceves, Seema S.
Published 2015

Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level

by Harismendy, Olivier, Bansal, Vikas, Bhatia, Gaurav, Nakano, Masakazu, Scott, Michael, Wang, Xiaoyun, Dib, Colette, Turlotte, Edouard, Sipe, Jack C, Murray, Sarah S, Deleuze, Jean Francois, Bafna, Vineet, Topol, Eric J, Frazer, Kelly A
Published 2010

Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes

by Udpa, Nitin, Ronen, Roy, Zhou, Dan, Liang, Junbin, Stobdan, Tsering, Appenzeller, Otto, Yin, Ye, Du, Yuanping, Guo, Lixia, Cao, Rui, Wang, Yu, Jin, Xin, Huang, Chen, Jia, Wenlong, Cao, Dandan, Guo, Guangwu, Claydon, Victoria E, Hainsworth, Roger, Gamboa, Jorge L, Zibenigus, Mehila, Zenebe, Guta, Xue, Jin, Liu, Siqi, Frazer, Kelly A, Li, Yingrui, Bafna, Vineet, Haddad, Gabriel G
Published 2014

The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families

by Yooseph, Shibu, Sutton, Granger, Rusch, Douglas B, Halpern, Aaron L, Williamson, Shannon J, Remington, Karin, Eisen, Jonathan A, Heidelberg, Karla B, Manning, Gerard, Li, Weizhong, Jaroszewski, Lukasz, Cieplak, Piotr, Miller, Christopher S, Li, Huiying, Mashiyama, Susan T, Joachimiak, Marcin P, van Belle, Christopher, Chandonia, John-Marc, Soergel, David A, Zhai, Yufeng, Natarajan, Kannan, Lee, Shaun, Raphael, Benjamin J, Bafna, Vineet, Friedman, Robert, Brenner, Steven E, Godzik, Adam, Eisenberg, David, Dixon, Jack E, Taylor, Susan S, Strausberg, Robert L, Frazier, Marvin, Venter, J. Craig
Published 2007

The Diploid Genome Sequence of an Individual Human

by Levy, Samuel, Sutton, Granger, Ng, Pauline C, Feuk, Lars, Halpern, Aaron L, Walenz, Brian P, Axelrod, Nelson, Huang, Jiaqi, Kirkness, Ewen F, Denisov, Gennady, Lin, Yuan, MacDonald, Jeffrey R, Pang, Andy Wing Chun, Shago, Mary, Stockwell, Timothy B, Tsiamouri, Alexia, Bafna, Vineet, Bansal, Vikas, Kravitz, Saul A, Busam, Dana A, Beeson, Karen Y, McIntosh, Tina C, Remington, Karin A, Abril, Josep F, Gill, John, Borman, Jon, Rogers, Yu-Hui, Frazier, Marvin E, Scherer, Stephen W, Strausberg, Robert L, Venter, J. Craig
Published 2007