Virtual genome walking across the 32 Gb Ambystoma mexicanum genome; assembling gene models and intronic sequence

QR Code

Virtual genome walking across the 32 Gb Ambystoma mexicanum genome; assembling gene models and intronic sequence

Large repeat rich genomes present challenges for assembly using short read technologies. The 32 Gb axolotl genome is estimated to contain ~19 Gb of repetitive DNA making an assembly from short reads alone effectively impossible. Indeed, this model species has been sequenced to 20× coverage but the r...

Full description

Bibliographic Details
Main Authors:	Evans, Teri, D. Johnson, Andrew, Loose, Matthew
Format:	Article
Published:	Nature Publishing Group 2018
Online Access:	https://eprints.nottingham.ac.uk/49288/

Similar Items

Mesoderm induction in Ambystoma mexicanum, a urodele amphibian
by: Chen, Yi-Hsien
Published: (2011)

Comparative pelvic development of the axolotl (Ambystoma mexicanum) and the Australian lungfish (Neoceratodus forsteri): Conservation and innovation across the fish-tetrapod transition
by: Boisvert, Catherine, et al.
Published: (2013)

Comparing yeast genome assemblies
by: Siow, Cheuk Chuen
Published: (2011)

Genome walking of chitinase gene in Sago Palm
by: Saiful Shakirin, Bin Rosli
Published: (2012)

Nanopore sequencing and assembly of a human genome with ultra-long reads
by: Jain, M., et al.
Published: (2018)

Genome walking of cysteine protease gene in Sago palm
by: Lee, Yen Sze
Published: (2012)

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
by: Ruperao, P., et al.
Published: (2014)

Effector gene prediction from fungal pathogen genome assemblies
by: Testa, Alison Clare
Published: (2016)

Long-read sequencing and genome assembly of natural history collection samples and challenging specimens
by: Bein, Bernhard, et al.
Published: (2025)

Genomic walking of heat shock protein 70 and cysteine protease in sago palm
by: Tie, Chui Ping
Published: (2011)

Subgroup-specific structural variation across 1,000 medulloblastoma genomes
by: Northcott, P., et al.
Published: (2012)

The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species.
by: Pattemore, J., et al.
Published: (2014)

Complete sequence and genomic annotation of carrot torradovirus 1
by: Rozado-Aguirre, Zuriñe, et al.
Published: (2017)

Plasmodium knowlesi Genome Sequences from Clinical Isolates Reveal Extensive Genomic Dimorphism
by: Miguel M., Pinheiro, et al.
Published: (2015)

Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14
by: Shah, R.M., et al.
Published: (2020)

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8
by: Hane, James, et al.
Published: (2014)

The complete genome sequence of the pathogenic intestinal spirochete Brachyspira pilosicoli and comparison with other Brachyspira genomes
by: Wanchanthuek, P., et al.
Published: (2010)

Gene-enriched draft genome of the cattle tick Rhipicephalus microplus: Assembly by the hybrid Pacific Biosciences/Illumina approach enabled analysis of the highly repetitive genome
by: Barrero, R., et al.
Published: (2016)

Sheep Genomics
by: Groth, David
Published: (2008)

Whole-genome sequencing, de novo assembly and comparative analyses of Manis Javanica and Manis Pentadactyla / Ranjeev Hari
by: Ranjeev, Hari
Published: (2017)

Comparative genomics reveals insights into avian genome evolution and adaptation
by: Zhang, G., et al.
Published: (2014)

The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens
by: Derbyshire, Mark, et al.
Published: (2017)

Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens.
by: Condon, Bradford J., et al.
Published: (2013)

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
by: Ellwood, Simon, et al.
Published: (2010)

Genome-wide analysis for genomic alteration in acute promyelocytic leukaemia
by: Hassan, Rosline
Published: (2017)

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
by: Gopalakrishnan, S., et al.
Published: (2017)

Understanding the genomic information of mycobacterium tuberculosis causing whole genome sequencing approach / Nur Azwin Ismail
by: Ismail, Nur Azwin
Published: (2015)

Whole genome sequencing, comparative genomics and virulence factors analyses of Meyerozyma guilliermondii strain soexpression system
by: Zainudin, Robiatul Azilah
Published: (2021)

Investigating the association between germ line specification and sequence evolution in vertebrates
by: Evans, Teri
Published: (2015)

Sequence and genome analysis of hepatitis C virus
by: Hamzah, Hairul Aini
Published: (2017)

The dynamics of genome replication using deep sequencing
by: Müller, Carolin A., et al.
Published: (2014)

Genome sequencing and annotation of Cellulomonas sp. HZM
by: Chua, P., et al.
Published: (2015)

Genome sequencing and annotation of Aeromonas sp. HZM
by: Chua, P., et al.
Published: (2015)

Young adults’ considerations for whole genome sequencing
by: Barnard, Pepita M.
Published: (2021)

Performance analysis of bacterial genome assemblers using illumina next generation sequencing data / Nur ‘ Ain Mohd Ishak
by: Nur ‘ Ain , Mohd Ishak
Published: (2020)

Pan-parastagonospora comparative genome analysis-effector prediction and genome evolution
by: Syme, Robert, et al.
Published: (2018)

Genetic resources, genome mapping and evolutionary genomics of the pig (Sus scrofa)
by: Chen, Kefei, et al.
Published: (2007)

Closing the genomic gaps of rat cytomegalovirus ALL-03 in genome scaffold
by: Balakrishnan, Krishnan Nair
Published: (2016)

ANTISENSE OLIGONUCLEOTIDES TO IMPROVE CFTR FUNCTION FOR PEOPLE WITH THE INTRON 9 5T POLYMORPHISM
by: Martinovich, K.M., et al.
Published: (2019)

Genomic epidemiology of methicillin-susceptible Staphylococcus aureus across colonisation and skin and soft tissue infection
by: Grinberg, A., et al.
Published: (2017)