The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing

The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing

Objectives: The assembly of fungal genomes using short-reads is challenged by long repetitive and low GC regions. However, long-read sequencing technologies, such as PacBio and Oxford Nanopore, are able to overcome many problematic regions, thereby providing an opportunity to improve fragmented geno...

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Bibliographic Details
Main Authors: Moolhuijzen, Paula, See, Pao Theen, Moffat, Caroline
Format: Journal Article
Language:English
Published: 2021
Subjects:
Comparative analysis
Genome assembly
MinION
Oxford Nanopore
Pyrenophora tritici-repentis
Tan spot
ToxA
Yellow spot
Ascomycota
Genome, Fungal
High-Throughput Nucleotide Sequencing
Nanopores
Online Access:http://hdl.handle.net/20.500.11937/87625

Internet

http://hdl.handle.net/20.500.11937/87625

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