eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA (eDNA) sequences exploiting Nextflow and Singularity

eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA (eDNA) sequences exploiting Nextflow and Singularity

Metabarcoding of environmental DNA (eDNA) when coupled with high throughput sequencing is revolutionising the way biodiversity can be monitored across a wide range of applications. However, the large number of tools deployed in downstream bioinformatic analyses often places a challenge in configurat...

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Bibliographic Details
Main Authors: Mousaviderazmahalleh, Mahsa Mousavi, Stott, Audrey, Lines, Rose, Peverley, Georgia, Nester, Georgia, Simpson, Tiffany, Zawierta, Michal, De La Pierre, Marco, Bunce, Michael, Christophersen, Claus
Format: Journal Article
Language:English
Published: Wiley-Blackwell 2021
Subjects:
Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
Ecology
Evolutionary Biology
Environmental Sciences & Ecology
environmental DNA
metabarcoding
Nextflow
Singularity
Online Access:http://hdl.handle.net/20.500.11937/86511

Internet

http://hdl.handle.net/20.500.11937/86511

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